Dickeya fangzhongdai ND14b: LH89_11200
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Entry
LH89_11200 CDS
T03347
Symbol
fadB
Name
(GenBank) multifunctional fatty acid oxidation complex subunit alpha
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced00071
Fatty acid degradation
ced00280
Valine, leucine and isoleucine degradation
ced00310
Lysine degradation
ced00362
Benzoate degradation
ced00380
Tryptophan metabolism
ced00410
beta-Alanine metabolism
ced00640
Propanoate metabolism
ced00650
Butanoate metabolism
ced00907
Pinene, camphor and geraniol degradation
ced00930
Caprolactam degradation
ced01100
Metabolic pathways
ced01110
Biosynthesis of secondary metabolites
ced01120
Microbial metabolism in diverse environments
ced01200
Carbon metabolism
ced01212
Fatty acid metabolism
Module
ced_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
LH89_11200 (fadB)
00650 Butanoate metabolism
LH89_11200 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
LH89_11200 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
LH89_11200 (fadB)
00310 Lysine degradation
LH89_11200 (fadB)
00380 Tryptophan metabolism
LH89_11200 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
LH89_11200 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
LH89_11200 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
LH89_11200 (fadB)
00930 Caprolactam degradation
LH89_11200 (fadB)
Enzymes [BR:
ced01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
LH89_11200 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
LH89_11200 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
LH89_11200 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
LH89_11200 (fadB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Pyr_redox_2
F420_oxidored
NAD_Gly3P_dh_N
UDPG_MGDP_dh_N
Motif
Other DBs
NCBI-ProteinID:
AIR69738
LinkDB
All DBs
Position
2542309..2544498
Genome browser
AA seq
729 aa
AA seq
DB search
MIYQGDTLYLNWLEDGIAELVFAAPGSVNKLDTRTVASLGDALNHLKRQPSLRALLLRSD
KSAFIAGADITEFLSLFAAPPETLHQWLTEANAIFSQLEDLPVPTLSAINGYALGGGCEC
ALATDFRIATPDVRIGLPEVKLGIMPGFGGTVRLPRLLGADGALEIITAGKDLPAGEALK
VGLVDAVADSDKLLPAAVHMLRLAMTDRLDWRDRRRQKQSPLRLNRIEATMSFATANALV
QQAAGRHYPAPMMALKTIEAAAGLHRDAALKIETDNFVELTQTTAAHALVGVFLNEQAVK
SAAKKWAGDATPPARVAVLGAGIMGGGIACQSARKGVPVWMKDISEKALTLGMEEAAKLL
NAQLERGKLDAMTMAGVLARIHPTLNNNGLEQADLIIEAVVENPQVKARVLADVEACVSE
QALIVSNTSTIPIGQLAASLQRPQNFCGMHFFNPVHRMPLVEVIRGPQTDEKTLARVVAY
ASKIGKTPIVVNDCPGFFVNRVLFPYIAAFNLLMRDGADFRDVDAVMEKQFGWPMGPAYL
LDVVGLDTAHHAQAVMSAGFPQRMAKTYRDAVDVLVEHQRFGQKSGAGFYRYYPDAKGKP
RREQDEQTDILLDAVCEPKRTFSAQEIIHRLMVPMLNEVARCLEEGIVATPAEADMALLY
GLGFPPFHGGACRYLDTLGSQRYVEIAQSLASLGPLYAIPDSLLQMAQRQQRYYPAVEPH
ADLSLHQPA
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgatctatcaaggcgacacgctgtacctcaattggctggaagacggcattgccgaactg
gtttttgccgcacccggcagcgtcaacaaactggatacccgcaccgtagccagccttggc
gacgcgctaaatcacctgaagcgccaaccgtcgttacgcgccctgctgctgcgctcggat
aaaagcgccttcattgccggagcggacatcaccgaattcctgtcgctgtttgccgccccg
ccggaaacgctgcatcagtggctgaccgaagccaacgccattttcagccagttggaggat
ttaccggtcccgacgctatccgccatcaatggctatgcgctgggcgggggatgcgaatgc
gcgctggcgaccgactttcgcatcgcgacgcctgacgttcgcatcgggttgccggaagtc
aaactggggatcatgccgggatttggcggcacagtccggttgccgcggttgctgggcgca
gacggcgcgctggagatcatcaccgccggtaaagatttgcctgccggcgaggccctgaaa
gtcgggctggttgatgcggttgcggacagcgacaaactgctgcccgccgccgtacatatg
ctgcgcctggcgatgacggaccggctcgactggcgtgaccgccgccgtcagaaacaatcg
ccgctacggcttaaccgtatcgaagccaccatgagtttcgctaccgccaacgcgttggtg
caacaggcggcgggccgccactaccccgcgccgatgatggcgctcaaaaccatcgaagcc
gccgccggactccaccgcgacgccgcgctgaagatagaaaccgataatttcgtcgagcta
acccaaacgacggcggcgcacgctctggtcggcgtcttccttaacgagcaggccgtaaaa
agcgccgccaaaaaatgggccggcgacgccacgccgccggctcgtgttgccgtgctgggc
gccgggatcatgggcggcggcatcgcctgccagtcggcacgcaaaggggtgccggtgtgg
atgaaagacatcagtgaaaaagcgctgacgctggggatggaagaagccgccaaattgctc
aacgcacagctggaacgcggcaaactggacgccatgaccatggcgggggtgctggcccgc
atccacccgacgctgaacaacaacgggcttgaacaggctgacctgatcatcgaagcggtg
gtggaaaacccgcaggtaaaagccagggtgctggctgatgtggaagcctgcgtcagcgag
caagcgctgatcgtctccaatacctcgacgattcccatcggacagttagcagcctcgttg
cagcggccgcaaaacttctgcggtatgcactttttcaatccggtgcatcgtatgccgctg
gttgaagtgattcgcggtccccaaaccgatgagaaaacgctggcccgcgtggtggcctac
gccagcaagatcggcaaaaccccgatcgtggtaaacgactgcccgggatttttcgtcaac
cgcgtgctgtttccctacatcgccgccttcaacctgttgatgcgcgacggcgcggatttc
cgcgacgtggacgccgtgatggaaaaacagttcggctggccgatggggccggcttatctg
ctggatgtggtcggattggataccgctcaccacgctcaggcggtcatgtcggcaggcttt
ccgcagcgcatggcgaaaacctatcgcgacgcagtcgatgtgctggtggaacatcagcgt
ttcggccagaagagcggcgcgggcttctaccgttactacccggacgccaaaggcaaaccg
cgccgggaacaggacgagcagaccgatatcttgctggatgcggtctgcgagccgaagcgc
accttcagcgcgcaggagattatccatcgcctgatggtaccgatgctcaacgaagtcgcg
cgttgtctggaagaaggcatcgtcgccaccccggcggaagccgacatggcgctgctttac
ggtctgggcttcccgccgttccacggcggcgcttgccgttatctggatacgctgggcagc
caacgctatgtggaaatcgcccagtcgctggcatcgctggggccgctttacgccataccg
gacagcctgttgcagatggcgcagcgccagcagcgttattacccggcggttgaacctcac
gccgatctttctcttcaccaaccggcataa
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