Dickeya fangzhongdai ND14b: LH89_11405
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Entry
LH89_11405 CDS
T03347
Symbol
rfaD
Name
(GenBank) ADP-L-glycero-D-manno-heptose-6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced00540
Lipopolysaccharide biosynthesis
ced01100
Metabolic pathways
ced01250
Biosynthesis of nucleotide sugars
Module
ced_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
LH89_11405 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
ced01005
]
LH89_11405 (rfaD)
Enzymes [BR:
ced01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
LH89_11405 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
ced01005
]
Core region
LH89_11405 (rfaD)
BRITE hierarchy
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GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
adh_short
KR
NAD_binding_10
Motif
Other DBs
NCBI-ProteinID:
AIR69777
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Position
2587164..2588096
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AA seq
310 aa
AA seq
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MIIVTGGAGFIGSNIVKALNDDGYRDILVVDNLKDGTKFANLVDLDIADYMDKEDFLASI
VAGDDLGDIDVIFHEGACSSTTEWDGKYMMDNNYQYSKDVLHYCLERGIPFMYASSAATY
GGRTDNFVEDRQYEQPLNVYGYSKFLFDQYVREILPQTNSQICGFRYFNVYGPREGHKGS
MASVAFHLNNQINQGEKPKLFAGSENFKRDFIYVGDVAAVNLWFWQHEVSGIFNCGTGRA
ESFQAVADAVLAYHQKDGVEYIPFPEKLKGRYQAYTQADLTNLRAAGYEKPFKTVAEGVA
DYLAWLNRNA
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgattatcgtaactggcggcgccggtttcatcggcagcaatatcgtaaaagcgctgaat
gatgacgggtatcgggatattctggtggtcgacaaccttaaggatggcaccaagttcgcc
aatctggtcgatctggacatcgccgattacatggataaggaagacttcctcgccagcatc
gttgccggagacgatctgggcgatatcgacgttattttccacgaaggcgcctgttcctcc
accaccgagtgggatggtaagtacatgatggataataactatcagtactccaaggacgtg
ctgcactactgtctggagcgcgggattccattcatgtatgcctcttccgccgctacctac
ggcggccgcaccgacaacttcgtggaagaccgtcaatatgagcagccgctgaacgtctac
ggctattccaagttcctgttcgaccagtatgtgcgtgaaattctgccgcaaaccaactca
caaatttgcggctttcgctacttcaacgtctacgggccgcgcgaaggccacaaaggcagc
atggccagcgtggcgttccacctgaataaccagatcaatcagggtgaaaagcccaaattg
ttcgccggcagcgaaaatttcaaacgcgatttcatctatgtcggcgacgtggcggcggtg
aatctgtggttctggcaacacgaagtttccggcatcttcaactgcggcaccggccgtgcc
gagtccttccaggccgtggcggatgccgtactggcctaccaccagaaagatggtgtggag
tacatccccttcccggaaaaactgaaaggccgctatcaggcttacacgcaggcagacctc
accaacctgcgcgccgctggttatgaaaagccgttcaaaaccgtagcggaaggggtcgcc
gactacctggcctggctgaaccgcaacgcctga
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