Cedecea neteri M006: LH23_18055
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Entry
LH23_18055 CDS
T03328
Name
(GenBank) RNase II stability modulator
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
cem
Cedecea neteri M006
Pathway
cem02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
cem00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LH23_18055
Enzymes [BR:
cem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
LH23_18055
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
PAS_10
GGDEF_2
DUF4478
Motif
Other DBs
NCBI-ProteinID:
AIR62491
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All DBs
Position
3800619..3802610
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AA seq
663 aa
AA seq
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MKDDLEQNLLYRYLGTTSPYWRLPADSNALQLAASEDSDTGQVVALDMAQADEIRQMTVI
TSSLTMTLSLFGIEVPVHMVGRKVSKREWAGTASAWHDTHSVARDLVQGLSFAEQVVSEA
NSVIVILDKQGNIQRFNRLSEEYTGMKEHEVIGQNVFKLFMSRSEAAASKRNISGFFRNG
SSYEVERWVKTRKGQRLFLFRNKFVHSGSGKNEIYLICSGTDITEERRAQERLRVLANTD
TITGLPNRNAIYDLITEAIAKRGDTQVGIVYLDLDNFKKVNDAYGHMFGDQLLQAVSLAI
LSCLEEGQVLARLGGDEFIVLATNTSQGSLEAMSSRILTRLKQPFRIGLIEVYSGCSLGI
SLAPQHGDERENLIRNADTAMYTAKESGRGKFCVFSPEMNQRVFEYLWLDTNLRKALDND
QLVIHYQPKMTWRGEIRSLEALVRWQSPERGLIPPQGFISYAEESGLIVPLGRWVMVSVV
QQVAKWRDKGINLRVAVNVSARQLADQTIFSDLKQALKDLNFEYCPIDVELTESCLIENE
ELALSVIKQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQSFVRDVHKHSVSQSLV
RAIVAVAQALNLQVIAEGVENQKEDAFLTKNGVNERQGFLFAKPMPAAVFERWFKRYQAR
TKR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacgatttggagcagaacctgctttatcgttacctggggacgaccagcccctac
tggcgtctaccggcggacagcaacgcccttcaactggcggccagcgaagattcagacacc
ggccaggtggtggcgttggacatggcacaggccgacgaaattcgccagatgacggtgatt
acctccagcctgaccatgacgctgtcgctgttcggcatagaagtgccggtgcatatggtc
ggccgcaaagtgtctaaacgcgaatgggcgggcaccgcctcggcctggcatgatacccat
tcggtagctcgcgacctggtgcagggcctctcttttgccgagcaggttgtctctgaagcg
aattccgtgattgtcattcttgataaacagggaaatattcagcgcttcaaccggttaagt
gaagaatacaccgggatgaaagagcatgaggtcatcggtcagaatgtctttaagctgttt
atgagccgcagcgaagccgccgcctcaaagcgcaatatcagcggattttttcgcaacggc
agctcctatgaagttgagcgttgggtcaaaacccgcaaaggtcagcggctgtttttgttc
cgcaacaagtttgtccacagcggcagcggtaaaaacgaaatctatctgatttgctccggc
accgacattaccgaagaacgccgcgcgcaggagcggctgcgggtgctggccaataccgat
accatcactggattgcctaaccgcaacgccatttacgacctgatcaccgaggccattgcc
aaacggggcgacacgcaggtcggtattgtctatctggacctcgataactttaaaaaagtg
aacgatgcctacggtcacatgtttggcgatcagctgctgcaggccgtgtcgctggcgatt
ttaagctgccttgaagaaggccaggtgctggcgcgcctcgggggtgatgaatttatcgtg
ctggcaacaaacacctctcagggctcgctggaagcgatgtcttcccgcattctgacccgc
ctgaagcaacccttcaggattggcctgattgaggtctacagcggctgttcactgggtatc
tcccttgccccgcagcacggcgatgaacgagagaatctgattcgcaacgccgatacggcg
atgtataccgccaaagagagcggccgcgggaagttttgcgtgttctcgccagagatgaat
cagcgggtgtttgagtatttgtggctggataccaatctgcgtaaagcgctggataacgat
cagttggtgattcattaccagccgaaaatgacctggcgcggtgaaatccgtagcctggag
gcgctggtgcgctggcaatcgccggaacgaggtcttattcctccgcagggctttatttcc
tatgcggaagagtccggcctgattgtgccgcttgggcgctgggtgatggtcagcgttgtg
cagcaggtagctaagtggcgggacaaaggcattaatctccgcgtggcggtcaacgtgtcc
gcccgccagcttgccgatcagactatttttagcgatctcaaacaggcactgaaagatctg
aattttgaatactgcccgattgacgttgagctaaccgagagctgtcttatcgagaacgaa
gagctggcgctgtcggttatcaagcaatttagtcaactgggcgcacaggtgcacctggat
gacttcggcacagggtattcgtctttatcgcagctggcgcgcttccctatcgatgccatt
aagctcgatcagtcctttgtgcgcgatgtgcataaacactcagtgtctcagtcgctggtg
agagccattgtggccgtggcgcaggcgctgaatctgcaggtcatcgccgagggcgtagaa
aatcaaaaagaagacgcctttcttaccaagaacggcgtcaacgaacggcaggggttctta
tttgcaaaaccaatgcccgcagccgtgtttgagcgttggtttaagcgctatcaggccaga
acaaagcgctag
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