Ctenocephalides felis (cat flea): 113378164
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Entry
113378164 CDS
T08578
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cfel
Ctenocephalides felis (cat flea)
Pathway
cfel03020
RNA polymerase
cfel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113378164
09124 Replication and repair
03420 Nucleotide excision repair
113378164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfel03021
]
113378164
03400 DNA repair and recombination proteins [BR:
cfel03400
]
113378164
Enzymes [BR:
cfel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113378164
Transcription machinery [BR:
cfel03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113378164
DNA repair and recombination proteins [BR:
cfel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113378164
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
113378164
NCBI-ProteinID:
XP_026474472
LinkDB
All DBs
Position
Unknown
AA seq
1184 aa
AA seq
DB search
MDDDTEICKYGTPLEPLDEEDDEEEISTELWQEACWIVINAYFDEKGLVRQQLDSFDEFI
QMSVQRIVEDSPAIDLQAEAQHTSGEIENPPRYVLKFEQIYLSKPTHWEKDGAPSPMMPN
EARLRNLTYSAPLYVDITKTIIMDGKDPVETQHQKTFIGKIPIMLRSTYCLLSGLTDRDL
TELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAFKAEIRSCLEHSSRP
TSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYD
FDDQEMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAREILQKEMLPHV
GVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNL
MKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLN
RLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAY
ISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMTTLRKLR
RQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENRTLLLKKRHIDMLKERDYTNY
GWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQERAYAYCTTYTHCEIHPAMILGVCASI
IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFR
ELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSETKRMGDQEEQFE
KPNRQTCQGMRNALYDKLDEDGIIAPGIRVSGDDVIIGKTITLPENDDELEGTTKRHTKR
DASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYR
QEDMPFTCEGLMPDIIINPHAIPSRMTIGHLIECIQGKLGANKGEIGDATPFNDAVNVQK
ISTLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL
VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL
RSNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVL
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgatacagaaatttgtaaatatggcacacccttggaaccattggatgaagaa
gatgatgaggaagaaatttcaactgagttgtggcaggaagcctgctggatcgttattaat
gcttatttcgatgaaaagggtttggttaggcagcaacttgatagttttgatgaattcatt
caaatgtctgttcaaagaattgttgaagactcacctgccattgatttacaagctgaagca
caacacacatcaggagaaattgaaaatccaccaagatatgtattaaaatttgaacaaatt
tatttgtcgaaacctacacattgggaaaaggatggtgctccaagtcctatgatgcctaat
gaagcaaggcttaggaatttgacttattctgctccattgtatgtagatataactaagaca
ataattatggatggcaaagacccagtggaaacccagcatcaaaagacatttattggtaaa
attccaataatgctcaggtcaacatattgtttattaagtggattaactgatcgtgattta
actgagttaaatgaatgtccattagatcccggaggttattttataattaatggttctgaa
aaggtacttattgctcaagaaaaaatggccaccaatactgtatatgtatttagcatgaaa
gatggcaaatttgcatttaaagctgaaattaggtcatgcctggaacatagctcaagaccc
acatctactctctgggtaaacatgatggctcgtggtggtcaaagtataaaaaaatcagca
attggtcaacgaattatagctattttaccgtacattaaacaagaaatacctataatgatt
gtttttagagctttgggttttgttgctgatcgtgatattttagaacatataatttatgac
tttgatgatcaagaaatgatggaaatggtaaaaccatcacttgatgaagcatttgttgta
caagagcaaaatgttgctttgaatttcattggtgctcgtggtgcgaggccaggtgttact
aaggacaaacgtataaaatatgctagagaaattttgcagaaagaaatgttgccacatgtt
ggtgtatcagatttttgcgagactaaaaaggcatatttcttaggttacatggtgcataga
ttactgttagctgcgttaggtagaagggaattagatgatcgtgatcattatggaaacaag
cgtctagatttggctggacctcttcttgcttttttgtttagaggcttattcaaaaatttg
atgaaagaggtacggatgtatgctcagaaatttattgatcgagggaaagattttaattta
gaacttgctataaaaacaaaaattataacagatggtttgagatattctttagctacagga
aattggggtgatcagaaaaaagcacatcaggcaagagcaggagtgtcacaggtgttgaat
agacttacttttgcttcaactttgtctcatttgagacgtgtgaattcaccaatcggcaga
gatggcaaactggcgaagcctcgacagcttcataacacgttgtggggtatgatttgccct
gctgaaactccagaaggagctgctgtaggacttgtgaaaaatttggcgctcatggcgtat
attagtgtcggatcccagccttcgcctatattagagtttttggaggaatggtctatggaa
aacttagaggaaattgcacctagtgctattgcggatgctactaaaatatttgtaaatgga
tgttgggtgggtattcacagagatccagaacaactcatgacaacactcagaaaacttcgc
cgccagatggatataattgtttctgaagtgtctatgattcgtgatattagagatagagaa
atacgtatttacactgatgctgggcgtatttgtagaccattgcttattgttgaaaataga
actttattattgaagaaaagacatattgatatgttgaaagaaagggattacaccaattat
ggttggcaagtattagtggcttctggtgtagttgagtacattgacactctagaagaagaa
actgttatgatagcgatgtctccagatgatcttaggcaagaaagggcttatgcttattgt
acaacttacacacattgcgaaatccacccagctatgattttgggggtctgtgcttctatt
attccttttcctgatcataatcaaagtcctagaaatacttatcagagtgctatgggtaaa
caagctatgggagtatacattacaaactttcatgttagaatggatactttggcacatgtt
ttatattatcctatgaaaccattggtaaccactaggtctatggaatatttgagattcaga
gaattaccagcaggaattaattctattgtagcaattttatgttacacgggatataaccaa
gaagatagtgttattttaaatgcttcagctgtcgaaagaggattttttagatcagtgttc
tatcgttcatataaagattctgaaacaaagcgtatgggtgaccaagaagagcagtttgaa
aagccaaatagacaaacatgtcagggaatgcgtaatgctctctatgataaattagatgaa
gatggaataatagcaccaggaatacgtgtatcaggggatgatgttattattggaaaaacc
attactcttcctgaaaatgatgatgagcttgaaggcacaacaaaacgtcatacaaagaga
gatgcttcaaccttcttaagaaacagtgaaactggaattgtggatcaagttatgttaact
cttaatagtgaaggatacaagttttgcaaaattcgagtaagatcagttcgtattccacaa
attggtgataaatttgcttctcggcacggacaaaaaggaacatgtggaatacaatataga
caagaggatatgccatttacttgtgaaggtttgatgccagatatcataattaacccacat
gctatcccttctcgtatgacaattgggcatttaattgaatgtattcagggaaagttgggt
gcaaataaaggtgaaatcggtgatgcaacgccatttaacgatgctgttaatgtgcagaaa
atatcaacattgcttcaagaatatggatatcacttaagaggtaacgaagttatgtacaat
ggacatacaggaagaaaaatcaatgctcaggtctttttgggacctacatactatcaacgt
ttgaaacacatggtggatgacaaaattcactcgagagctagaggacctgtgcaaattttg
gtacgacaacctatggagggcagagcacgtgatggtggtttgcgttttggagaaatggaa
cgggactgtcaaatatctcatggagctgcacagttcttacgagaaaggctgtttgaagtt
tctgatccttacaggatacatgtttgcaacttttgtggtttgatagctattgcaaacttg
agaagtaatacttttgagtgcaaaggctgcaaaaacaaaactcagatttctcaagtacgt
ctaccatatgctgccaaactattgtttcaagaactgatgtcaatgaatatagcaccaagg
cttatggtattataa
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integrated database retrieval system
