Cricetulus griseus (Chinese hamster): 100755682
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Entry
100755682 CDS
T02813
Symbol
Scn11a
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
cge
Cricetulus griseus (Chinese hamster)
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cge04040
]
100755682 (Scn11a)
Ion channels [BR:
cge04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100755682 (Scn11a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
100755682
NCBI-ProteinID:
XP_027271352
UniProt:
A0A9J7G1K8
LinkDB
All DBs
Position
4:complement(226853929..226920971)
Genome browser
AA seq
1766 aa
AA seq
DB search
MEDRYYPVIFPDERNFRPFTSDSLAAIEKRIAIQKEKKKSKDKAAAEPQPRPQLDLKASR
KLPKLYGDIPHDLIAKPLEDLDPFYRDHKTFMVLNKKRTIYRFSAKRALFILGPFNPVRS
LVIRISVHSLFSMLIICTVLINCMFMANSGDGSLLMEISEYIFTGIYILEAVIKILARGF
ILDEFSFLRDPWNWLDFIVIGTAVATCFPGTKVNLSALRTFRVFRALKAISVVSGLKVIV
GALLRSVKKLVDVMVLTLFCLSIFALVGQQLFMGTLNRRCIKDNCGPNSTSNKDCFVKEK
NSDDFIMCGTWFGNSRCPEGSTCNKTSFNPDYNYTNFDNFGWSFLAMFRVMTQDSWEKLY
RQILRTSGIYFVFFFVVVIFLGSFYLLNLTLAVVTMAYEEQNRNVAAETEAKEKMFREAQ
QLLREEKEALVAMGIDRSSLNSLQASSFSPKKRKFFGSTRKSFFTRKSKKDPASASDLED
DSSKNPQLLEQTKRLSQNLPVDLFDEHMDHFHRQRALSAVSILTITMQEQEKSQEPCLPC
GKNLASKYLVWDCSPQWLCLKKALRTVMTDPFTELAVTICIIINTVFLAMEHHNMDDAFI
NLLKIGNWVFTGIFVAEMCLKIIALDPYHYFRHGWNIFDSIVALLSLADVLYNNLSDKSS
RSNRSFLASFRVLRVFKLAKSWPTLNTLIKIIGHSVGALGNLTVVLAIVVFIFSVVGMQL
FGKKFNKTMCTTKPQCMRRWHMGDFYHSFLVVFRILCGEWIENMWECMEGMGGSLLCVVV
FLLIMVIGKLVVLNLFIALLLNSFSNEERDGSPEGETRKTKVQLALDRFYRAFSFLVRAL
RDFCCKKCRRQNSPKPKEITGSFDSEDKDIIPLDTKPWGEFDALRTWTAGHEGARLAPLA
EEEDDMEGYGELRVPSVSQAGAKVQTYDVPLETTKPTSPDDQDVETEVFAEEDPHLTIQS
VQKNSDAASVLSECSTVDLNICRNSHNVDTPKKQPDRCLPKGLSCHFLCHKTDKKKPRWV
VWWNLRKTCYQIVKHSWFESFIIFVILLSSGALIFEDVNISKRPQIERLLRCTDNIFTFI
FILEMILKWVAFGFRRYFTSAWCWLDFLIVIVSVVSLMNLPSLKSFRTLRALRPLRALSQ
FEGMKVVVNALISAIPAILNVLLVCLIFWLIFCILGVNFFSGKFGRCINGTDINKYLNHT
EIGNQSQCQSSNYSWEVPKVNFDNVGNAYLALLQVATYKGWLDIMKAAVDSRGKDEQPDF
EANRFAYLYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKISGQDIFMTEEQKKYYNAMKK
LGTKKPQKPIPRPLNKCQAFVFDLVTSQVFDVIILGLIVLNMIIMMAEYEGQTQEVKNIF
DIINIAFVVIFTIECLIKMFALRQYYFTNGWNLFDCVVVVLSIISSLVSGLENSVPFPPT
LFRIVRLARIGRILRLVRAARGIRTLLFALMMSLPSLFNIGLLLFLVMFIYAIFGMNCFS
KVERGSGIDDIFNFETFSGSMLCLFQVTTSAGWDSLLSPMLASKADTNSSSQDSCQQPRV
AIIYFVSYIIISFLIVVNMYIAVILENFNTATEESADPLGEDDFEIFYEIWEKFDPEATQ
FIQYSALSDFADALPEPLRVAKPNKFQFLVMDLPMVTGDRLHCMDVLFAFTTRVLGNSSG
LDTMKSLMEDKFMEANPFRKLYEPIVTTTKRKEEELCAAVIQRAYRKHVEKMIKLKLQDR
SSSSRPTVCNGDLSSLDVPKIKVHYD
NT seq
5301 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaggtactacccagtgatcttcccagacgagcggaatttccgcccctttact
tctgactccctggctgcaatagagaagcgaatcgccatccagaaggagaagaagaagtcc
aaggacaaggcagctgctgagccccagcctcggcctcagctggacctaaaggcctccagg
aagttgccaaagctttacggtgacattccccacgatctgatagcgaagcccctggaagac
ctggacccattctacagagaccataagacattcatggtgttgaacaagaagaggacaata
tatcgtttcagtgccaagcgggccttgttcattttggggcctttcaatcccgtcagaagt
ttagtgattcggatctctgtccattcgctcttcagcatgctcatcatctgtacagtgctc
atcaactgtatgttcatggctaattctggggacggaagtttactcatggaaatttccgag
tacatctttactgggatttatattttagaagccgtgattaaaatattggcaagaggcttc
atcctggatgagttttctttcctccgagacccgtggaactggctggatttcattgtcatt
ggaacagcggtcgcaacgtgtttcccaggtaccaaagtcaatctttcagctcttcgtacc
ttccgagtgttcagagctctgaaagcaatttctgtggtctcaggtctgaaggttattgtt
ggggccctgctgcgctctgtgaagaagctggtagatgtcatggttctcactctcttttgc
ctcagcatctttgccctggttggtcagcagctcttcatgggaactctgaaccggagatgt
attaaggacaactgtggccccaactctacatccaacaaggattgctttgtaaaggagaaa
aatagtgacgacttcatcatgtgtggcacctggttcggtaacagccgctgtcccgaaggc
tctacatgcaataaaacctcgttcaacccagactataactacacgaactttgacaacttt
ggctggtcttttcttgccatgttccgggttatgactcaggactcctgggagaagctttat
cgacagatcctccggacttctggaatctactttgtcttcttcttcgtggtggtcatcttc
ctgggctctttctacctgctcaacttaaccctggctgtcgttaccatggcgtatgaagaa
cagaacaggaatgtagccgcagagacagaggccaaggaaaagatgtttcgggaagcacag
cagctcttaagggaggagaaagaggctctggttgccatgggaatcgacagaagttcgctt
aattcccttcaagcatcgtccttttctccaaagaagaggaagttttttggtagtacaaga
aagtccttctttacgagaaagtctaagaaggatccggcctcagcctcagatttggaagat
gattcctctaaaaaccctcaactgcttgagcaaaccaaacgactgtcccagaacttgccg
gtggacctctttgacgagcacatggatcacttccacaggcagagggcgctgagtgccgtc
agcatcctgaccatcaccatgcaggaacaagaaaaatcccaggagccttgcctcccatgt
gggaaaaacttggcatccaagtacctggtgtgggactgcagcccccagtggctgtgtctg
aagaaggcccttcggaccgtgatgacagacccctttactgagctggccgtcaccatctgt
atcataatcaacaccgtcttcctggccatggagcaccacaacatggatgacgcttttata
aatctactgaaaataggaaactgggttttcactgggattttcgtagccgaaatgtgtcta
aagatcatcgcgctggacccttaccactacttccgccacggctggaacatcttcgacagc
attgtggccctcctgagtcttgcggacgtgctttacaacaacctgtcggataagagcagt
cgctcaaatcgctccttcttggcttccttcagagtgctgagagtcttcaagttagccaaa
tcctggcccactctaaacacgctcattaagatcatcggccactccgtgggtgcgcttgga
aacctgactgtggtgctggccattgtggtcttcattttttccgttgttggcatgcagctt
tttggcaaaaagttcaacaagaccatgtgtactacgaagccgcagtgcatgcggcgctgg
cacatgggagacttctaccactccttcctggtggtcttccgcatcctgtgcggggagtgg
atcgagaacatgtgggaatgcatggaggggatgggcggatctctgctgtgtgtcgtcgtc
ttcctgttgatcatggtgatagggaaacttgtggtgcttaacctcttcattgccttgctg
ctcaattccttcagcaacgaggagagggatgggagccccgaaggagagacccggaaaacc
aaagtgcagctggctctggatcgcttctaccgggccttttccttcttggtgcgtgccctt
cgggatttttgttgcaagaaatgcaggaggcaaaactcaccaaagccaaaagagatcaca
ggaagttttgacagcgaggacaaagacattattccccttgatacaaagccctggggggag
ttcgatgcactaaggacttggaccgctggacacgagggggctcgcttggccccactcgca
gaggaagaggatgacatggaaggctatggtgaactcagagtcccatctgtctcacaagcg
ggtgccaaagttcagacctatgatgtccctctggagaccacgaagcccaccagcccagat
gaccaagatgtggaaactgaggtgttcgctgaagaagatccccatttaaccatacagagt
gttcaaaagaactcggatgctgcaagtgtgctctcagagtgcagtacagttgacctgaat
atctgcagaaattcgcacaatgtggatacccccaaaaagcaaccagatagatgcttgccc
aaaggcctcagttgtcattttctatgccacaagacagacaagaaaaagccccgctgggtt
gtgtggtggaatcttcggaaaacctgctaccaaattgtgaagcacagctggtttgagagc
tttataatctttgtcatcctgctgagcagtggagcattgatatttgaagatgtcaacatc
tccaaacggccccaaattgagcggttgctaaggtgtactgacaatatcttcacatttatc
ttcatcctggagatgattctaaagtgggtggcctttggatttcgaaggtatttcaccagt
gcctggtgctggctcgatttcctcattgtaatcgtgtctgtggtcagtctcatgaactta
ccaagcttgaagtccttccggactctgcgagcactgaggcctctgcgggcgctgtctcag
tttgaaggaatgaaggttgtggtcaacgccctcatcagtgctatacctgccattctcaat
gtcttgctggtctgcctcattttctggctcatattttgcatcctgggagtaaattttttt
tctgggaaatttggaagatgcattaatggaacagatataaataaatatttgaatcatacc
gaaattggaaaccaaagccaatgtcaaagtagcaattactcgtgggaggtcccgaaagtc
aactttgacaacgtggggaacgcctacctcgctctgctgcaggtggcaacatataagggc
tggctggacattatgaaggctgctgttgattccagagggaaagatgagcagccagatttt
gaggcaaatcgctttgcctatctctacttcgtggtttttatcatctttggctcgttcttc
accctgaacctctttatcggcgttattattgacaacttcaaccagcagcagaaaaagata
agtggccaagacatttttatgacagaagaacagaagaaatactataatgcaatgaaaaaa
ttaggaaccaaaaaacctcagaaacccatcccaaggccactgaataaatgtcaagccttt
gtttttgacctggtcacaagccaggtctttgacgtcatcattctgggtcttattgtccta
aatatgattatcatgatggctgaatatgaaggccagacccaagaagtgaagaatatcttt
gatattatcaacatagcctttgtggtcatctttaccatagaatgtctcatcaaaatgttt
gctttgaggcaatactacttcaccaatggctggaatttatttgattgtgtggtcgtggtt
ctttctatcattagttccctggtttctggcttggagaacagcgttcctttccctcccacg
ctcttccgaatcgtgcgcttggcgcggattggccgcatcctccgactggtccgggctgct
cgaggcatcaggacgctgctgtttgctctgatgatgtctctgccgtctctgttcaacatc
ggcctgctgctcttcctcgttatgttcatctacgccatcttcgggatgaactgcttctcc
aaagtggagaggggctctggaatcgacgacatcttcaactttgaaacgttctcgggcagc
atgctctgcctcttccaggtgaccacttcagctggctgggactctctgctcagccccatg
ctggcttcaaaagccgacaccaactcctcctcccaagacagctgccagcagccccgggta
gccatcatctatttcgtcagttacatcattatctccttcctcatcgtggtcaacatgtac
atcgcggtgattctagagaatttcaacacggccaccgaggagagcgcggaccccctgggc
gaagacgactttgaaatcttctatgagatctgggagaagtttgaccccgaagcaacgcag
ttcatccagtactcggccctctctgactttgcggacgccctgcctgagccgctgcgcgtg
gccaagcctaacaagtttcagtttctggtgatggacttgcccatggtgacgggcgatcgt
ctccactgcatggacgttctctttgccttcaccaccagggtcctcgggaactccagcggc
ttggacaccatgaaatcgctgatggaggataagttcatggaggccaatcctttcagaaag
ttgtacgagcccatagtcaccaccaccaagagaaaggaggaggagctgtgtgccgccgtc
atccagagggcctaccgaaaacacgtggagaagatgatcaagttgaagctgcaagacagg
tcgagttcgtcacgcccaacagtttgcaacggagacttgtctagcttggatgtgcccaag
atcaaagttcactatgactga
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