Cricetulus griseus (Chinese hamster): 100771087
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Entry
100771087 CDS
T02813
Symbol
Msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X2
KO
K08737
DNA mismatch repair protein MSH6
Organism
cge
Cricetulus griseus (Chinese hamster)
Pathway
cge01524
Platinum drug resistance
cge03430
Mismatch repair
cge05200
Pathways in cancer
cge05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100771087 (Msh6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100771087 (Msh6)
09162 Cancer: specific types
05210 Colorectal cancer
100771087 (Msh6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
100771087 (Msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cge03400
]
100771087 (Msh6)
DNA repair and recombination proteins [BR:
cge03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100771087 (Msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Arb1
Motif
Other DBs
NCBI-GeneID:
100771087
NCBI-ProteinID:
XP_027273796
UniProt:
A0A9J7JJD7
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Position
5:89577024..89599679
Genome browser
AA seq
1358 aa
AA seq
DB search
MSRQSTLYSFFSKSPALGNTKKAAARASREGAAVPEASASRGGDAAWSEAGSESRPAAVS
ASSPEAKNLNGRPRSSAAPADPDSSSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFIR
KKGKSVRVHVQFFDDSPTRGWVSKRLLKPYTGSKSKEAQKGGHFYSSKSEILRAMQRADE
ALNKDKVKRLELAVCDEPSEPEEDEETEAPAAYVSDKSEKDNPSESEEELQPKMQGPRRS
SRQVKKRRVIDSESDLDGSDVEFKPDTKQEGSSDEMSSGVGDSDSEGLGTLGKGAPKRKR
TVAGHSAFRKKASRKETPSATKRVTQVSSETKSTLSAFSASPNSESQAHVSGGGDDSGGL
TVWYHETLDWLKPEKRRDEHRRRPDHPDFNSSTLYVPEDFLNSCTPGMRKWWEIKSQNFD
LVIFYKVGKFYELYHMDAVIGVNELGLVFMKGNWAHSGFPEIAFGRFSDSLVQKGYKVAR
VEQTETPEMMEARCRKMAHVSKFDRVVRREVCRIITKGTQTYGVLEGDPSESNSRYLLSL
KEKEEDSSGHTRVYGVCFVDTSLGKFFIGQFPDDRHCSRFRTLVAHYPPVQILFEKGNLS
TETKTVLKGSLSSCLQEGLIPGSQFWDATKTLRTLLEEGYFSGKSEGSGVVLPGVLKSMT
SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYFPLDSDKVTTVRPG
AIFTTASQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLC
SPSAISDRLDAVGDLMALPDKVNEVTDLLKKLPDLERLLSKIHNIGSPLKSQNHPDSRAI
MYEETTYSKKKIIDFLSTLEGFKVVCKIIELMEGVADDFKSKTLRRVVTLQTKSPEGRFP
DLSAELNRWDTAFDHEKARKTGLITPKAGFDPDYDQALADIKENEQSLLEYLDKQRSRIG
CRTIVYWGIGRNRYQLEIPENFATRNLPEEYELKSTKKGCKRYWTKTIEKKLSNLINAEE
RRDMSLKDCMRRLFYNFAKNYKDWQSAIECIAVLDVLLCLANYSQGGDGPMCRPVILLPG
EDTHPFLELKGSRHPCVTKTFFGDDFIPNDILIGCEEEGEENGKAYCVLVTGPNMGGKST
LIRQAGLLAVMAQLGCYVPAEECRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILR
HATAHSLVLVDELGRGTATFDGTAIASAVVKELAETIKCRTLFSTHYHSLVEDYSKNVSV
RLGHMACMVENECEDPSQETITFLYKFIQGACPKSYGFNAARLANLPEEVIRKGHRKARE
FEKMNQSLRLFREVCLASDRPTVDAEAVHRLLALIKDL
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacaaagcaccctgtacagcttcttctccaagtctccggcgctcgggaacacc
aagaaggccgcggcccgggcctcccgtgaaggcgccgccgtccctgaggcctccgcttcc
cgcggcggggatgcggcctggagcgaggctggatccgaatcccggcccgcggcggtgtcc
gcctcgtcgcccgaggcgaagaatctcaacgggaggccgcggagctcggccgcgccggcc
gatccggacagcagttcttgtgacttctcaccaggtgatttggtttgggctaagatggaa
ggttacccttggtggccttgcctggtttataatcatccctttgatggaacattcatccgg
aagaaagggaaatcggtccgtgttcatgtccagttttttgatgacagtccaacaaggggc
tgggttagcaaaaggctgttaaagccgtatacaggttcaaagtcaaaggaagcccaaaag
ggaggtcatttctacagttcaaagtctgaaatactcagagcgatgcaacgtgcagatgaa
gccttaaataaagacaaggtcaagaggcttgagttggcagtgtgtgatgagccttcagag
ccggaggaggacgaagagacagaggcgcctgcagcgtatgtgtctgataaaagtgaaaaa
gataatccgagtgagagtgaagaagagctgcagcccaagatgcaggggcctcggcggagc
agccggcaagtcaaaaagcgaagggtcatagattctgagagtgatcttgacggctcggat
gtagaattcaagccagacactaagcaagaaggaagcagtgacgaaatgagcagcggagtt
ggggacagcgatagtgaaggcctgggcaccttgggcaagggtgctccaaagcgcaagaga
acagtggctggtcacagtgcatttagaaagaaagcttcaaggaaggaaacaccctcagct
accaaacgagtgactcaggtttcttcagaaaccaagagtaccttgagtgctttttctgct
tctccaaattctgaatcccaggcccatgtcagtggaggaggcgatgacagcggtggactc
actgtttggtatcatgaaactttagactggctcaagccagaaaagagaagagatgagcac
aggagacggcctgatcaccccgattttaattcttctacactctacgtgcctgaagatttc
cttaactcttgtactccagggatgaggaagtggtgggagattaagtctcagaactttgat
cttgtcattttttataaggtggggaagttttacgaattgtatcacatggatgctgttatt
ggagtcaatgagctggggctagtattcatgaagggcaactgggcccattctggttttccg
gaaattgcattcggccgattttcagattccttggtgcagaagggctataaagtagcacgg
gtggaacagacggagactccagaaatgatggaggcacggtgccggaaaatggcccatgtg
tctaagtttgatagagtggtgagaagggaggtttgcaggatcattaccaagggcacacag
acgtacggtgtgctggaaggtgatccctctgagagcaacagtaggtaccttcttagcctt
aaagagaaggaggaagattcgtctggtcacactcgtgtatatggtgtgtgctttgttgac
acgtcgctgggcaagtttttcataggtcagtttccagatgatcgccattgttccagattt
aggacactcgtggcacactatcctccagtacaaattttgtttgagaagggaaatctttca
acagaaaccaaaacagtcctaaagggttcactgtcctcttgtcttcaggaaggtctgata
ccaggttctcaattttgggatgccactaagactttgagaacacttcttgaagaagggtat
tttagtgggaagtcagaaggcagtggtgtagtgctgcctggggtgcttaaaagtatgacc
tcggagtcggattctattggcctgacaccaggggagaagagtgaattggccctgtctgct
ctaggtggttgtgttttctacctcaaaaaatgcctgattgaccaggagcttctatcaatg
gctaattttgaggaatattttcccttggattctgacaaggtcacaacagtaagacctggt
gcgatcttcactacagccagtcagcgaatggtgctagatgcagtgacattaaacaatttg
gagattttcctgaatggaacaaatggttctactgaagggactctgctagagaggcttgat
acttgccatactccctttggcaagcggctgctaaaacagtggctttgtgctcccctctgt
agcccctctgctattagtgaccgtttagatgctgtgggagacctgatggctttgcctgac
aaagtcaatgaagtcacagacctcctaaagaagctaccagatcttgagaggctactgagt
aagatccataacattggatctccactgaagagtcagaaccacccagacagcagggctata
atgtatgaagaaaccacatacagcaaaaagaagatcattgattttctgtctactctagaa
ggattcaaagtagtatgtaagattatagagcttatggagggtgtcgctgatgattttaag
tctaaaaccctcaggcgggttgttactctacagacaaaaagtcctgaagggcgctttcct
gatctgagcgcagagctgaaccgatgggatacagcttttgaccatgagaaggctcggaag
acaggactcatcactcccaaggcgggctttgatcctgattatgaccaagcacttgctgac
atcaaagagaatgaacagagcctcctagaatacttggataaacagcgcagtcgcattggc
tgcaggaccatagtctactggggaattggtaggaaccggtaccagttggagatcccagag
aattttgctacccgtaacctcccggaagaatatgaattaaaatctactaaaaagggctgt
aaacgatactggaccaaaacaattgagaagaaattatctaatcttataaatgctgaagaa
cgtagggacatgtctttgaaagactgcatgaggcggctgttctataactttgctaaaaat
tacaaggactggcagtctgctatagagtgcattgcagtgttggatgtcttactgtgcctg
gctaactatagtcaaggaggagatggtcctatgtgtcggccagtaattctgttaccagga
gaagatacacaccccttcctagagcttaaaggctcacgacatccctgcgttacaaagact
ttttttggagatgattttattcctaatgacattctaataggctgtgaggaagagggagaa
gaaaatggcaaagcttattgtgtgcttgttactggaccaaatatggggggcaaatctaca
ctcataagacaggctggtctgttggctgtaatggcccagctgggttgttatgtacctgct
gaagaatgtcggctcacgccggtagatagggtgtttaccagacttggtgcctcagatagg
ataatgtcaggtgaaagtacattttttgttgagttgagcgaaactgctagcatacttagg
cacgcaacagcacattctttggtgcttgtggatgaattaggaagaggaactgcaactttc
gatgggacagcgatagccagtgcagttgtcaaagaacttgctgaaaccataaagtgtcga
acattgttttctacacactatcattcattagtagaagactattctaaaaatgtttctgtg
cgcctaggacatatggcttgcatggtagagaatgagtgcgaggaccccagccaggagact
atcaccttcctctacaagttcattcagggagcttgtcccaagagctacggcttcaatgca
gcaaggctggctaatcttccagaggaggtcattcgaaagggacacagaaaagcaagggag
tttgagaagatgaatcagtcattacgattatttcgggaagtttgtctggctagtgacagg
ccgactgtagatgctgaagctgtccacaggcttttggctctgattaaggacttgtag
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