Cryptococcus gattii: CGB_E5020W
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Entry
CGB_E5020W CDS
T02232
Name
(RefSeq) DNA-directed RNA polymerase II largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cgi
Cryptococcus gattii
Pathway
cgi03020
RNA polymerase
cgi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CGB_E5020W
09124 Replication and repair
03420 Nucleotide excision repair
CGB_E5020W
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgi03021
]
CGB_E5020W
03400 DNA repair and recombination proteins [BR:
cgi03400
]
CGB_E5020W
Enzymes [BR:
cgi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CGB_E5020W
Transcription machinery [BR:
cgi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CGB_E5020W
DNA repair and recombination proteins [BR:
cgi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CGB_E5020W
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
AcetDehyd-dimer
Motif
Other DBs
NCBI-GeneID:
10189812
NCBI-ProteinID:
XP_003194546
UniProt:
E6R7B9
LinkDB
All DBs
Position
E:join(956057..956140,956214..956307,956369..956541,956598..956864,956916..957483,957538..957718,957774..957853,957905..957926,957980..958027,958079..958139,958189..959304,959353..961766,961822..961926,961980..962127)
Genome browser
AA seq
1786 aa
AA seq
DB search
MTVTFPYSSAPVKQVKEIQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGT
IDRNFKCQTCLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDP
MVANAVRRIKAQHRLKAIWALAKDKKICEPDELDEKDNGDATFEDEYLQEKKATMKGHGG
CGHEQPVWRKKGLKLLGVWKPTDKGEDEATEPEERNVSPGEVYNILKKITPEDLHIMGLN
ADYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSEDDLTYKLSQIIKFNGVVRRMEAEGV
PPSVVNEQFDLLQYHVCTYMDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMRGNLMGKR
VDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPATYPGARY
YVKDTGERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMN
YSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIV
QDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWDGSIPPPAIFKPKPMWTGKQLLSMTIPK
GINITYKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNGLVHVIFRELGHVAAR
DFFSAVQRVVNYWLLHYGFSVGIGDTIVDKATMAGITNRMVEAKEAVQKLVQEAEANRMK
PKPGMTIRETLEASIAAELNKARDWTGKTTQDNLKADNNVKQMVVSGAKGSFINISQMSG
VVGQQFVEGKRIAFGFRHRSLPHFSKDDYGPESRGFVENSYLRGLTPQEFWFHAMGGREG
LIDTAVKTAETGYIQRRLVKAMEDLKVAYDGTVRNSVNEVVQFLYGEDGMDGAAMEKQSL
DIIRLSDRAFERRYKIDVLGANGFSKGVLQAGIDQSSISLQKLLDEEFAQISEDRHILRS
EIYQDGTPGHPLPVNIQRVIQNSQQIFHIDPRVPSDLDPVYLLEQREALAERLLVVRGDD
KLSRAAQKNATLVFNMLLRSHLATRRVLEEYHLNREAFDWVIGEVEQIFNKAVVNAAEMV
GTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINVAVNIRTPALNVYLDPEY
SKTEEDAHQIMRKLTYTRLRDITATVEIFYDPKLDSTDIEEDKDFVDAFFAIPDEDIRLE
LHSPWLLRLELDRAKVLEGGYEMSQIVDAIADTVGKDVFVIHSEDNAPKLVIRIRVVAEK
EDEELLGDEDMFLKRIEGTLLDQVELGGITGITRVFISEGKQVVISQNGEYDQQKEWFLE
TDGINLKEVMAVDGVNAFRTYSNNCYEVYETLGIEAARNALYKELNGVIEMGGSYVNYRH
LALLCDLMCSKGALMSITRHGINRTDAGALSRAAFEETVEILLEAAAVGDIDDCKGVAEN
VLLGQMAPMGTGAFDVSLDMNMLKDVIVDHRLPVQNMMAAGMTGGMTPGGAMTPYDNLSP
MWGGDKGALGHAAFSPIQSSANDEGGNFAYMGYGQSPMHGGMSPAGYSPSSPAGYSPTSP
FAVTSPAYSPTSPFAGAAAGSASPWVGRGGYGATSPAYSPTSPQYSPTSPQFSPTSPSFS
PSSPTYSPASPAYGGAGVGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAF
SPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSPTYSPASPAYSPTSPQYSPTSPAYSPT
SPAYSPTSPAYGGAAPNGGTAQQQNGPARPGWGNAGGYGTSPSWKS
NT seq
5361 nt
NT seq
+upstream
nt +downstream
nt
atgacggtcacatttccttactcctctgcgccggtcaagcaggtcaaggagatccaattt
ggtattatgagcccagaggagattaaagccttttctgtcgccaaaatcgaatccaccgag
gtcttggatgagaatgggaagcaaaaggttggaggtctgatggatcccaagatgggcacc
atcgacaggaatttcaaatgtcaaacttgtctcgaaggcatgtccgaatgtccaggtcac
tttggtcatatcgaactcgcccgaccggtttttcaccaaggtttcattgtcaaggtgaag
aagatcttggagtgtgtttgttatagctgtggaaaactcaaggtcgacatgcgagatccg
atggtagcgaatgcggtccgacgtataaaggctcaacaccgactcaaagccatttgggcg
ctcgctaaggacaagaagatctgtgaacctgatgagctggatgaaaaggataacggcgat
gccacatttgaggacgagtatctgcaagaaaaaaaggcgacaatgaagggtcacggtggt
tgtggtcacgaacaacctgtatggagaaagaagggattaaaattgctgggtgtctggaag
cctaccgacaagggagaggatgaggccaccgagccagaggaacgcaatgtttctccaggg
gaagtttacaacatccttaaaaagatcactcccgaggacctacatatcatgggtctcaat
gccgactatgcccgacccgactggatgattcttactgttcttcctgtacctcctgcagct
gtccgaccttcaatcgccgtcgacggtggtgccatgcgtagtgaagacgatttgacctac
aagctttcacagatcatcaagttcaacggtgtcgtacgacgaatggaggccgaaggtgta
ccgcccagtgtcgtaaacgaacagttcgacttgcttcagtaccatgtatgtacatacatg
gacaatgacattgcaggattgcctagagatcaacagaagggaggtagggccatcaaggct
atcagggcaaggttaaaaggaaaagaaggtcgtatgagaggtaatttgatgggaaagcgt
gtcgatttctcagcgcgaacggttattactggtgatcccaatttgcaattggatcaggtc
ggtgtgcccaagagtatcgccatgactttgacataccccgagcgagtcactccatacaat
attgtctaccttcaaacccttgtcaacaatggtcccgctacctatcccggtgctcgatac
tacgtcaaggacaccggagaacgagtcgatttgaagtaccgcaaatctggtgaaccaatc
agtttgcagtttggttggattgtggaaagacatttgaaggatggggactacgtactgttt
aaccgacaaccaagtttgcataaaatgtccatgatgtcccatcgagtcaagttgatgaat
tattccactttccgtttgaacctttcagttacctcaccttataatgctgatttcgacggt
gatgaaatgaacttgcacgttccgcagagtgaagagacaagagcagagttgagtcagatt
gcttgggttcccagacagattgtctcgccccaagcgaacaagccggttatgggtattgtc
caggacactctgtgtggtatccgtaaattcactctccgagacaatttcctcgactggctt
caagttcagcacattcttctttggcttcctgaatgggacggatccatccccccaccagcc
attttcaagcctaagcccatgtggaccggtaaacagcttttatccatgaccattcccaag
ggaatcaacatcacctataaaaacaatgagaagccttcgccgatcgacgtgacagatgag
aatgtgttgatcgaaaatggggagttagtgcacggaacgattgtgaagaacatggccggc
agtgccaacaacggtttggtgcacgtcatcttccgagaactgggccacgtcgctgctcga
gatttcttttcagcggtgcagagggttgttaactattggttactgcactacggtttctcc
gtcggtatcggtgacaccattgttgataaggcgactatggcgggtatcactaaccgaatg
gtagaagccaaggaagctgtccaaaagttggtccaagaagctgaagcgaaccgaatgaag
cccaagcccggtatgactatccgagaaaccctcgaagcgtctatcgccgcagagcttaac
aaggcgcgtgattggactggtaagacgactcaggataacctcaaggcggacaacaatgtc
aagcagatggtggtatctggtgccaagggttcgttcattaacatctcccagatgagtggt
gttgtgggtcagcagtttgttgaaggaaaacgtatcgcgttcggcttccgacaccgatca
ttaccacacttctcaaaagacgactatgggcctgagtctcgaggtttcgttgaaaactca
tatttgcgtggtttgactcctcaggaattctggttccacgctatgggtggtcgagaaggt
ttgattgatactgctgtcaagactgccgagactggttatatccaaagaagattggtcaag
gcgatggaggacttgaaggttgcttatgatggtactgtgagaaatagtgtgaatgaggtt
gtgcagttcttgtatggtgaagacggtatggacggtgccgcaatggagaagcagagtttg
gatattatccgactctccgatcgagcgtttgagaggcgatataagattgatgttcttggt
gccaatggcttctccaagggggttcttcaggccggtatcgaccaatcatccatctctctt
caaaagctcctcgacgaagagtttgctcaaatctccgaagaccgtcatatccttcgttcc
gaaatttaccaggacggtacccccggtcaccccttacctgtcaacattcaacgtgtcatc
cagaattctcagcaaatcttccacattgacccccgtgttccctctgatctcgatcccgtc
tacttgctcgaacaaagagaggcgctggccgagagactgcttgtggtgcgaggtgatgac
aagctttcaagagcggcgcagaaaaacgccacccttgtgttcaacatgcttttgcgatcc
caccttgccactcgtcgagttctggaagagtaccaccttaacagagaggcgttcgactgg
gttatcggagaagtggaacaaatcttcaacaaggctgttgtcaatgctgccgaaatggtt
ggtacgcttgctgctcagtccattggtgagcctgccactcagatgacgcttaacacattc
cattatgcgggtgtggcgagtaaatctgtgactggtggtgttcctcgtctgaaggaaatt
atcaatgtcgctgtcaacattcgaacccctgcgttaaacgtctacctcgatcctgagtac
agtaagaccgaagaggatgcgcatcagatcatgcgaaagttgacgtacactcgattgaga
gatattactgccactgttgagatcttctacgaccccaagcttgactctacggatattgag
gaagacaaggactttgtggacgcgttcttcgctattcctgatgaagacattagactggag
cttcattccccttggctattgcgtcttgagcttgaccgagccaaggtacttgaaggtggt
tatgaaatgtcgcagattgttgatgccattgccgacaccgtgggcaaggacgtctttgtt
attcactctgaagacaacgctcccaagcttgttattcgtattcgagtcgttgctgagaag
gaggatgaagaactgttgggtgacgaggacatgttcctcaagagaattgaaggcaccttg
ctcgatcaagttgagcttggtggtatcactggtattactcgagttttcatctcggaaggc
aagcaggttgttatctctcagaacggtgaatacgatcagcagaaggaatggttcctcgaa
acggacggtataaacctcaaggaagttatggctgttgacggcgtcaacgctttcagaact
tactccaacaactgttacgaagtctacgagactcttggtatcgaagccgcccgaaacgca
ctctataaggagcttaacggtgttattgagatgggtggttcctacgtcaactaccgacat
cttgcgctgttgtgtgatcttatgtgtagcaagggtgctttgatgagtatcactcgacac
ggtattaaccgaactgatgctggtgctctctcaagagcggcgttcgaagagacggtggaa
atcttgcttgaggctgcggctgtgggtgatatcgatgactgtaagggtgttgcagagaat
gtgttgttgggtcagatggctcctatgggtactggcgctttcgatgtgtcacttgacatg
aacatgctcaaggatgtgattgttgaccaccgactgccggtgcagaacatgatggccgcg
ggcatgactggtggaatgactccaggaggagcgatgactccttatgacaatctgtcaccc
atgtggggtggagacaagggggctttgggtcacgcggcattctcacctatccaaagctca
gcgaacgacgaaggtggcaattttgcttatatgggttatggacaatcaccaatgcacggc
ggtatgtctcctgcaggttactcaccttcatcgcctgctggatactcgcctacttcaccg
tttgctgttacaagcccggcatacagccctacttctccgtttgcgggtgcagcagcgggc
tcagcgtccccgtgggttggaagaggcgggtacggcgctacgagtcctgcttactccccg
acatctcctcaatattctcccacttctccccagttctctcctacatcaccatccttctct
ccatcttcacccacttattcaccagcttctccggcttatggcggtgcgggtgttggaaat
agggcgtcaccttattcccccacatctcctgcctacagcccgacaagcccaatgggtggt
attacgtctccgcagtacagtcctacgagtccgaggtacagtccgacaagcccggcgttt
tcacctacaagtccgtcgtacagtccgacaagccctgcgcccttccaggccaccagtccg
aggtattctcccaccagtcctcaattctctcccacttcgccgacctactctcctgccagt
ccagcttactcgcctacaagcccccaatattcacctactagtcccgcctacagtccgacg
tcgccggcttacagcccgacatctccagcgtacggcggtgctgcccccaatggcggtacg
gctcaacagcaaaacggtccggcgaggcctggatggggaaatgctggggggtacgggaca
tcgcctagctggaagagctag
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integrated database retrieval system
