KEGG   Carassius gibelio (silver crucian carp): 127943424
Entry
127943424         CDS       T08819                                 
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC1
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
cgib  Carassius gibelio (silver crucian carp)
Pathway
cgib03020  RNA polymerase
cgib03420  Nucleotide excision repair
cgib04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:cgib00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    127943424
  09124 Replication and repair
   03420 Nucleotide excision repair
    127943424
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    127943424
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cgib03021]
    127943424
   03400 DNA repair and recombination proteins [BR:cgib03400]
    127943424
Transcription machinery [BR:cgib03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     127943424
  RNA polymerase III system
   RNA polymerase III
     127943424
  RNA polymerase I system
   RNA polymerase I
     127943424
DNA repair and recombination proteins [BR:cgib03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      127943424
SSDB
Motif
Pfam: RNA_pol_Rpb5_N RNA_pol_Rpb5_C NYD-SP12_N
Other DBs
NCBI-GeneID: 127943424
NCBI-ProteinID: XP_052395860
LinkDB
Position
A22:9331714..9335158
AA seq 210 aa
MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRTDLTV
LVAHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVD
MAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVA
RYFGLKRGQVVKIIRPSETAGRYITYRLVQ
NT seq 633 nt   +upstreamnt  +downstreamnt
atggatgatgaggaagagacttacagactatggaaaattagaaaaactatcatgcagctt
tgccacgatcgtggttatttggtgacgcaggacgagctggaccagactctagatgagttc
agaagccagtttggagacaaacccagcgaaggtcgaccccgacgaaccgatctcacggtc
ctggtggcccacaacgacgatcccaccgaccagatgttcgtgttcttccctgaggaacca
aaggttggcatcaaaaccataaagatgtattgccagcgtatgcaagaagaaaacatcacc
cgggccatcattgtagtccagatgggcatgacgccctccgccaaacagtctctggtagac
atggctccaaagtacatacttgagcaatttcttcagcaggaacttctgatcaacattacc
gaacacgagcttgttccagagcacatagtgatgactaaagaggaagtgacagagttgctg
gcgcggtataaactaaaggaaagccagcttcccaggattcaagctggggatcctgttgcc
cgttacttcggcttgaagagaggccaggttgttaagatcatcagaccgagtgaaactgcg
ggacggtacatcacatacagactggtccagtga

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