Carassius gibelio (silver crucian carp): 128025230
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Entry
128025230 CDS
T08819
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03020
RNA polymerase
cgib03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128025230
09124 Replication and repair
03420 Nucleotide excision repair
128025230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgib03021
]
128025230
03400 DNA repair and recombination proteins [BR:
cgib03400
]
128025230
Enzymes [BR:
cgib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128025230
Transcription machinery [BR:
cgib03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
128025230
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
128025230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
128025230
NCBI-ProteinID:
XP_052467320
LinkDB
All DBs
Position
A12:14137611..14151019
Genome browser
AA seq
1965 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGVLSPDELKRLSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDAN
NPKIKDILTKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQQDTEEDLTKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKF
SRPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINA
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNMATLKPSNKAFEKKFKFDYTNERALRRTLQEDVVKDVLTNAHVQSSLEREFEKMRED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPARVVEGVYDLSKKLVI
VNGEDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQDDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGALSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYS
PTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPS
YSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPT
SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKY
SPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcgtcctcagccctgatgaacttaaacggttgtccgttactgaagggggcatcaag
taccctgagactacagaaggagggcgccctaaactagggggccttatggacccccggcaa
ggggtaattgagagatcaggcagatgccagacatgtgcaggtaacatgactgagtgtcct
ggtcatttcggtcacattgagctggcaaagccagtgttccatgttggcttcatcacaaag
ataatgaaggtcctccgctgtgtctgtttcttctgttcaaaactgcttgtggacgcgaac
aatccaaaaatcaaagacatcttgaccaagtcgaaggggcagccgcgtaagcgtctgact
cacgtctatgacctctgtaaaggcaaaaacatttgtgagggtggagaggagatggacaac
aaatttggagttgagcagcaggatacagaagaagacctgaccaaagagaagggtcatggg
ggctgtggcaggtaccagccacgcatccgtcgctctggcctggagctgtatgcggagtgg
aagcacgtgaatgaagactcacaggagaagaagatcctcctcagtccagaacgtgtgcat
gagatcttcaaacgcatatcagatgaagaggatctgatcttgggcatggaccccaaattc
tcccgtcctgagtggatgatcgtcacagtgttgcccgtgccccctcttgctgtgagacca
gctgtggtcatgcagggctctgctagaaaccaggatgatttaacacacaagttggctgac
attgtgaagatcaataaccagctgaagcgaaatgagcagagtggagctgcagcgcatgtt
atagcagaggatgtcaagctgcttcagttccacgtggccaccatggtagacaatgaactg
ccaggtctacctagggcaatgcaaaagtctggtcgtccactaaaatctatcaagcagagg
ctaaagggtaaggaaggacgtgtccgaggtaatctgatggggaagcgtgtcgacttctct
gcccgaactgtcatcacgccggaccccaacttgcagatcgaccaggttggggtgccccgc
tccatcgccgcaaacatgaccttccccgagatcgtcacgccctttaacattgacagactg
caagagcttgttaggagaggtaacagtcagtaccctggagccaaatatatcatccgagac
aacggggacagaattgacctgcgattccaccctaagccaagtgaccttcaccttcagatt
ggatacaaagttgaacggcacatgtgtgatggagacattattgtgttcaacagacagcct
acgctgcacaaaatgtctatgatgggccacagagtgcgaatcttgccatggtcgacattt
cgactcaaccttagtgtgacaaccccatacaatgctgactttgacggcgatgagatgaac
ctgcacttgccacagtctctggagacccgtgctgagatccaggagctggccatggtgcct
cgtatgatcgtcacaccacagtccaacagacccgtcatgggtatagtgcaggacaccctg
acagctgtgcgcaagtttaccaagagagatgtcttcttagagaggggtgaggtgatgaac
ctcctcatgttcctctccacatgggatggcaaagtcccccaacctgctatcttgaagcct
cgacctctctggactggcaaacagatcttcagcctgatcatccctgggcacatcaatgcc
atccgcacacacagcactcaccctgatgaagaggacagcggcccttataaacacatctcc
cctggagacactaaggtgattgtggagaacggtgagctgatcatgggcatcctgtgtaag
aagtcattgggaacctcagctggctctctggtccacatctcctaccttgagatgggccat
gacatcacacgactcttctattccaacatccagactgttgtcaacaactggctgctcatt
gagggtcactctattggtattggagactccattgccgataaggcgacatatcaggacatt
cagaacacgattaagaaagccaaacaggatgtgatagaggtcattgagaaagcccacaac
aacgagttggagcccaccccaggtaacactctgagacagacctttgagaaccaggtcaac
cgcatcttgaacgatgctcgagacaagactggatcctctgcccagaagtcattgtctgag
tacaataatttcaaatccatggtggtggctggttcaaaaggctctaaaattaacatttct
caggttattgctgtggtggggcagcagaacgttgagggtaagagaatccccttcggtttc
aagcaccgcaccctccctcacttcattaaggatgactatggtccagaaagtagaggcttc
gtagaaaactcctatctggccggtctcacaccaactgagtttttctttcacgccatggga
ggcagagagggtctgatcgacacagctgtcaaaactgctgagacaggttatattcagcgt
cgtctgatcaagtctatggagtctgtaatggtaaagtatgatgctacagtcagaaactct
attaaccaagttgtccagctgaggtatggagaggatggactggcaggagaggctgtcgag
ttccaaaacatggctaccctcaagccatccaacaaagcctttgagaagaagttcaagttt
gactacaccaatgaacgagctctccgccgcactcttcaggaagatgtggtgaaagatgtg
ttgaccaatgcccacgtccagagttctcttgagagagagtttgagaagatgagggaagac
cgagagatcttgagggctattttccccacgggagacagcaaggtggtactaccgtgcaat
ttggccagaatgatctggaatgctcagaagatcttccgcatcaatcctcgaacaccaact
gacctcaacccagcacgagtagtggaaggagtttatgacttgagtaagaagctggtgatc
gtaaatggtgaagaccagttaagcaggcaagcccaggagaacgccactctgctcttcaac
atccacctgcgctccaccctgtgctccaagcgaatgactgaggagttccggcttagtaca
gaggcttttgattggctgctgggagaaatcgagaccaaatttaaccagtccattgctcac
cctggtgagatggtaggagctctggctgcccagtctctgggagagcctgctactcagatg
accctgaatacattccactacgccggtgtgtccgccaaaaatgtcacactcggtgtccct
cgactcaaagagcttatcaacatctccaagcgtcccaagaccccctccttgaccgtcttt
ctcctgggccaagcagcccgtgatgcagagagggccaaagatatcctgtgtcggttggag
cacacaaccctgcgcaaagtcactgccaacacagccatctattatgaccccaaccctcag
aacactgtggtgactgaggatcaggagtgggttaacgtgtactatgagatgcctgacttc
gatgtgacccgcatttcaccctggctgctgcgtatagaacttgaccgcaaacacatgact
gatcgtaaactgactatggagcagattgcagagaagatcaatgcaggatttggggatgac
cttaattgcatcttcaatgatgacaatgctgagaaactggttttgcgaatccgcatcatg
aacagtgacgaaaacaagtttcaagacgatgaggaggtagtggataagatggatgacgat
gtcttccttcgctgcatcgaatccaacatgctgacagacatgacactgcaaggcatcgaa
cagatcagcaaggtgtacatgcatctaccacagactgacaacaagaagaaaatcatcatt
acagaagatggagagtttaaagccttgcaagagtggatcttggaaacggatggagtcagt
cttatgagggtcctcagtgagaaggacgtggaccctgtcagaaccacctccaacgacatc
gtggagattttcactgttcttggtattgaggctgtgcgtaaggctctggaaagagagttg
taccatgtcatctctttcgacggttcttacgttaactaccgccatcttgctttgctgtgt
gacacgatgacctgcaggggtcacttgatggccatcactcgtcacggtatcaacaggcag
gacactggtccactaatgaagtgctcttttgaagagacggtggatgtgttgatggaagca
tcatctcatggtgaatgtgacccaatgaaaggagtgtctgagaatatcatgctgggacag
ctggctcctgcaggcactggttgctttgatctgctattggatgctgagaagtgcaagtat
ggcatggagattcccaccaatatccctggtatcagtgttgccggacccacgggtatgttc
tttggctctgcccccagccccatgagtggcatgtcacctgccatgactccctggaacaca
ggagccactcctgcatatggtgcctggtctcccagtgttggaagtggaatgacaccaggt
gctgcaggcttctctcccagcgctgcatctgatgccagcggcttctcgcctggctattct
cctgcctggtctcccactcctggttctcctggatcccctggaccagctagcccttatatc
ccctcaccaggagccttgtctccgaattactctccaacttctcctgcctacgagcctcgt
tctcctggtggatacaccccgcagagccctggttactctccgacttcgccatcatactct
ccaacttcgccatcttattctcccaccagtccgaactacagccccacatctccgtcctac
tcacccacatcaccctcctactctccgacttcgccgtcttattctccaacatctccaagc
tactctccgacttcgccgtcttactctccaacttcgccgtcttactccccgacttcgccg
tcttactcgccaacatcccccagctatagccctacgtcccccagctacagcccaacctca
ccgagttacagccccacgtctccatcttattccccaacttctccatcttattccccgacc
tccccgtcttactctcccacctctccaagctactctccaacctccccgtcctattctcca
acatctccgagctacagtcccacttcgcccaactatacgcccacgtcgccaagttactct
ccaacctctccatcttacagccccacctcaccttcctactctcccacctctcccaattac
accccaaccagtccgaattattcccccacatctccttcttactccccaacttcgccgtcc
tattctccatccagtccacgttacaccccgcagtctcccacctacaccccaagctcgccc
tcttacagtcccagctctccttcctactctcccacctctccaaaatacactcccacctcc
ccctcctacagtcccagctctcccgaatataccccaacatccccaaaatattcacccact
tccccaaagtactctcccacttcgcccaaatacagtcccacttctccaacctactcccca
actactcccaagtacagccccacttcccctacttactctccaacttctcctacctacacc
ccaaccagtcccaaatattcccccacctctccgacttactctccaacttctcccaaatac
tcacccacatcccctacctactctccaactagtccaaagggttcaacctacagccccact
tctcccggctacagccccacctctccaacctacagcccagccatcagccctgacgacagc
gatgaagaaaataattaa
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