Clupea harengus (Atlantic herring): 105890769
Help
Entry
105890769 CDS
T09045
Symbol
scn4ab
Name
(RefSeq) sodium channel protein type 4 subunit alpha B isoform X2
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
char04040
]
105890769 (scn4ab)
Ion channels [BR:
char04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
105890769 (scn4ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
105890769
NCBI-ProteinID:
XP_012672299
Ensembl:
ENSCHAG00000017312
UniProt:
A0A6P3VII8
LinkDB
All DBs
Position
1:complement(10187935..10239212)
Genome browser
AA seq
1826 aa
AA seq
DB search
MAGLLLPTDGTDVFRRFTAESLAGIERRMEEEAAEQERIKELNANTGTEPNEENLPKPSS
DLEAGKAVPFIYGDPPPELLNTPLEELDPYYKAQKTFIVINKGNTIFRFNAEPACYCLSP
FSIVRRGAIKVLIHSLFSMFIMVTILANCVFMTMSDPPAWNKIMEYVFTGIYTFEATMKV
LARGFCMGDFTFLRDPWNWLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTITVIPGL
KTIVGALIQSVKKLRDVMILTVFCLAVFALVGLQLFMGNLRQKCVIWPPLSNFTLETFTS
TPNYTTNTTFDYKEYIDDPVNHYFLEGSLDPLLCGNSSDAGGCPDGYMCLKAGNNPNYGY
TNYDSFGWAFLALFRLMTQDYWENLFQLTLRAAGKTYMIFFVVMIFLGSFYLINLILAVV
AMAYAEQNEATIAEAIEKEAEYAQILEQLKKNEAARQGRIAGSKMSLSSQGKKDEGTENE
HSDAGRSLGKEALKDEESKGVIEKSNGSMDYLQVPGAQERKASAVSAMTTASHAMDEFDD
LQRPCPPCWYKFADIFLKWDCCPPWVFFKKWVHFVVMDPFVDLGITICIVLNTVFMAMEH
YPMTPEFENMLSVGNLVFTGIFTAEMVFKLIGMDPYYYFQVGWNIFDSIIVTMSLVELGL
ADVQGLSVLRSFRLMRVFKLAKSWPTLNMLLRIIGNSVGALGNLTLVLGIIVFIFAVVGM
QLFGKNYSECVCKIAQDCVLPRWHMHDFFHAFLIIFRVLCGEWIETMWDCMEVAGEGMCL
CVFMMVMVIGNLVVLNLFLALLLSSFSGDNMSAPDDEGENNLQIAIGRINRGIDWAKAYI
IGQVRGLLGLKPKKGDGEEEDEDDHVKSNNLVLNHLDSGEPEVKKVEGVWGREDDTSHDD
SFTNALTLKVPIAKGESDFDTHDEDSVSEYEHEAEDDKKTKKEEYADDTSECSTVDKGPL
IEEVEEEEEEDTDFPQECYTENCLRRCPCLALDITQDKGKIWWTLRRTCFTIVEHNYFET
FIILMILLSSGALAFEDIYLEQRRTIKIILEYADQVFTYVFIVEMLLKWVAYGFKVYFTN
AWCWLDFLIVDVSIISLTANLLGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALVG
AIPSIFNVLLVCLIFWLIFSIMGVNLFAGKFYYCVNTTSEERFTTDVVNNKTECLYLIES
GFDARWTNIKVNYDNVGMGYLSLLQVSTFKGWMDIMYGAVDSRSVEDQPEYEANLYMYIY
FVIFIIFGSFFTLNLFIGVIIDNFNQQKSKFGGKDIFMTEEQKKYYNAMKKLGSKKPQKP
IPRPENKICGLFYDLVSQQFFDILIMILIMLNMVTMMVETDNQSDEMVDTLYLINFVFIV
VFTMECCLKMIALRQYYFTIGWNIFDFVVVILSVVGLLLADLIEKYFVSPTLFRVIRLAR
IGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKREGMVD
DMFNFETFGNSIICLFMITTSAGWDGLLSPILNSGPPDCDPDLENPGTDVRGNCGNPGVG
IIFFCTYIVMSFLVVVNMYIAIILENFNVATEESADPLCEDDFEMFYETWEKFDPDASQF
ISYGQLSDFCDTLKDPLRIPKPNTIKLITMDLPMVPGDKIHCLDILLALTAEVLGNSGEL
DTLKASMEEKFMANNPSKASYEPITTTLKRKQEDVAARVIQRALRKYILQRSLKHASFLY
REKSDLTREGEEPPEKEGMIAIRMSQFYGDGSEQDVALSDTIAGSDLVPPSPSGPVEVQN
EVVLHSAPFTLPDSAVFVDNLRESIV
NT seq
5481 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcctgctcctcccgactgatggcaccgatgtgttccgccgcttcaccgcggag
tcgctggcgggaatcgagcgccgcatggaggaggaggccgccgagcaggagcgcattaag
gagctgaacgccaacaccggcactgagccgaacgaggagaacctccccaaaccctccagt
gaccttgaggcaggaaaggccgtgcccttcatctacggagacccacccccagagctactt
aacacgcccctggaggagctggacccctactacaaagcccagaagacctttatcgtcatc
aacaaagggaataccatcttcaggttcaacgctgagccagcctgctactgtctgagcccc
ttcagcattgtcagacgaggagccattaaagttctcatacattcattgttcagcatgttc
atcatggtcactattctagctaactgcgtgttcatgacgatgagcgaccctccagcgtgg
aataaaattatggagtatgtttttactggtatctatacatttgaagcaactatgaaagtg
ctagccagaggattctgtatgggagatttcacattccttcgcgacccatggaactggctt
gattttatggtcatcagcatggcgtatgtcaccgagtttgtcgatctgggcaatgtgtct
gctcttaggacattccgagttcttcgtgccctgaaaactatcactgtaattcctggtctg
aaaaccatagttggtgcactgatccagtccgtgaagaagctacgggacgtgatgattctc
acagtgttctgtctggctgtcttcgccctggtgggcttgcagctcttcatgggaaacctg
cggcagaagtgcgtcatttggccaccactgtccaacttcacgctggagacgtttacctcc
accccaaactacaccacaaacactacctttgactataaggaatacatcgatgacccagtc
aaccattacttcctggaaggtagcttggacccgctgctgtgtgggaacagctcagatgct
ggtggctgccctgatggatatatgtgccttaaggcaggaaacaaccccaactatggctac
acaaactacgactcatttggctgggccttcctggctcttttccgtctgatgacacaggac
tactgggagaatcttttccagctgacactccgtgcagctggcaagacttacatgatcttc
tttgtggtcatgatcttcctcggttctttctacctcatcaacctcattctggcagtggtt
gccatggcatacgccgaacagaatgaagccaccattgctgaggccatagagaaggaagcg
gagtatgcccagatcctggaacagctgaagaagaatgaagctgcgaggcaagggagaata
gccggcagcaagatgtccctgtcgagtcagggcaaaaaagatgaagggacagagaatgag
cacagtgatgccggtcgaagccttggcaaggaagccctcaaggacgaggagtctaaaggg
gtcattgagaagtccaatggaagcatggactacctgcaggtcccaggagctcaggagaga
aaagcaagtgctgtcagtgcaatgacaacagcaagccacgccatggacgaatttgatgac
cttcagaggccatgtcccccttgctggtacaagtttgcggacatctttctgaagtgggat
tgctgtcctccctgggtgttctttaagaagtgggtgcactttgtggtgatggacccgttt
gtggacttgggtatcaccatctgcatcgttctcaacactgtcttcatggccatggagcac
tatccaatgaccccggagtttgagaacatgctgtcagtggggaatttggtcttcactggt
atcttcacggctgagatggtcttcaaactcatcggcatggatccgtattattacttccag
gtgggctggaacatctttgacagcatcatcgtgaccatgagtctagtggagctgggtctg
gctgatgttcagggcctgtctgtgctgcgctccttccgtttgatgcgcgtcttcaaactg
gcaaagtcctggcccaccctcaacatgctgctccgcatcatcggcaactctgtgggcgct
ctgggcaacctgactctcgtccttggcatcatcgtcttcatcttcgctgtggtgggcatg
cagctgttcggcaagaactacagtgaatgtgtgtgcaagattgcccaggactgcgtgctg
cctcgctggcacatgcatgacttcttccacgccttcctcatcatcttccgcgtcctgtgt
ggggagtggatcgagaccatgtgggactgcatggaggtggcaggtgaaggcatgtgcctc
tgcgtcttcatgatggtcatggtcatcggtaatctggtggtcctgaacctcttcctggct
ttgctgttgagctccttcagcggagataacatgtccgcaccagatgatgaaggagagaac
aacctccagatcgccattgggagaatcaaccggggcattgattgggcgaaagcctacatt
attgggcaagtcaggggacttttggggctaaaacccaaaaagggtgatggggaagaggag
gatgaggacgatcacgtcaagagcaacaacttagtcctgaaccacctggattcgggcgag
cctgaggtgaagaaagtggagggcgtgtggggacgggaggatgatacaagccatgacgac
tcgttcacgaacgctttgaccctcaaggtgccaattgccaagggagagtcggactttgac
actcacgatgaggacagcgtctcagagtatgaacatgaggcagaagatgacaaaaaaact
aagaaggaggaatatgcagatgacacttcagaatgcagtacggtggacaagggtcctctg
atagaggaggtggaggaagaggaagaggaggacaccgatttcccccaggagtgctacaca
gagaattgtctccgccgctgtccttgcctggctcttgacatcacccaggataaagggaaa
atctggtggaccctccgacgcacgtgcttcactatagtagagcacaactactttgagacc
ttcatcattttaatgatcctgctcagcagcggtgctctggcctttgaggacatctacctt
gaacaaagaagaaccattaagatcattctggagtatgctgatcaggtgttcacatacgtc
ttcattgttgagatgctcctcaaatgggtggcttatggcttcaaggtctactttaccaac
gcctggtgctggctggacttcctcattgttgatgtttccatcatcagcctgacggccaac
ctcctgggttactcagagctggggccaatcaagtccttgcgtacccttagggccctgaga
cccctcagagccctgtccagatttgaggggatgagggtggtggtaaacgcactagtgggt
gccatcccctccatctttaacgtgctgctggtctgcctgatcttctggctcatcttcagc
atcatgggcgtcaacctctttgccggaaagttctactactgtgtgaacaccacgtcagag
gagcgttttaccacagatgtggtcaacaataaaacagagtgtttgtatctcattgagtct
ggttttgatgctagatggaccaacatcaaggtcaactacgacaatgtgggcatgggctat
ctttctctgcttcaagtgtcaacatttaagggttggatggacatcatgtatggagcagtt
gattctcgttcggttgaagatcaacctgagtatgaagcaaacctgtacatgtacatctac
tttgtcatattcatcatctttggttccttctttaccctcaatctcttcattggtgtcatc
attgacaatttcaaccaacagaaatcaaagtttgggggcaaggacatcttcatgacagaa
gaacagaaaaagtactacaatgctatgaagaaactgggttctaagaagcctcagaagcct
ataccaagaccagagaacaaaatttgtggattgttctatgacttggtcagccaacaattc
tttgacatccttatcatgatattgatcatgctcaacatggtgaccatgatggtggaaacg
gacaaccagagtgacgagatggtggacacactttacctcattaactttgtcttcattgtg
gtctttacaatggaatgctgtctgaaaatgattgcccttaggcaatactacttcacgatt
ggctggaacatttttgactttgtcgttgttattctgtccgtagtgggtctcttgctggca
gacctcatcgagaaatattttgtttctccaactcttttccgtgtgatccgacttgccagg
attggtagagttctgcgcctcattcgcggtgccaagggaatacgaacacttctgtttgcc
ctgatgatgtcacttcctgctcttttcaacatcggccttcttctttttctcatcatgttc
attttctccatttttggcatgtccaactttgcctacgtgaagcgtgaaggcatggttgat
gacatgttcaacttcgagacttttggcaacagcataatttgcctcttcatgattacaact
tctgccggttgggacggactcctttcgcccatcttgaacagcggtccacctgattgtgac
cccgatttggaaaacccaggaacagacgtgaggggtaactgtggcaaccctggtgtagga
atcatcttcttctgcacttatattgttatgtccttcttggtagtggtcaacatgtacatt
gccatcattctggagaacttcaacgtggccacagaggaaagtgctgacccgttgtgcgag
gatgattttgagatgttctacgagacgtgggagaagtttgatccggatgcttcacagttc
atcagctatggtcagctctcggacttttgcgacaccctaaaagatcccctcaggatccca
aaaccaaacacgatcaagctgatcaccatggacctgcccatggtgccaggcgataagatc
cactgcctggacatcctcctcgctctgactgccgaggtgctgggcaactccggagagttg
gacacactcaaggcaagcatggaggagaagttcatggcaaacaacccgtccaaggcctcg
tacgagcccatcaccaccacccttaagcgcaagcaagaggacgttgccgcccgagttatc
cagagagccttgcgcaagtacatcctccagcgttcgctaaagcacgcctcattcctgtac
cgcgagaagtcagacctgaccagggaaggtgaagagccacctgagaaggaaggaatgatc
gctatcagaatgagccagttctatggtgatgggtcggagcaggatgttgccctgtcggac
actatagcaggctctgacctagttcccccctctccctccggacccgtggaggtccagaat
gaagtggtcttgcactcggccccgttcactctaccagactctgctgtatttgtagacaac
ctgagggagagtattgtttag
DBGET
integrated database retrieval system
