Clupea harengus (Atlantic herring): 105891600
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Entry
105891600 CDS
T09045
Symbol
grin1b
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1b isoform X3
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04020
Calcium signaling pathway
char04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
105891600 (grin1b)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
105891600 (grin1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
char04040
]
105891600 (grin1b)
Ion channels [BR:
char04040
]
Ligand-gated channels
Glutamate (ionotropic)
105891600 (grin1b)
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
DUF2529
DUF6724
Motif
Other DBs
NCBI-GeneID:
105891600
NCBI-ProteinID:
XP_012673230
Ensembl:
ENSCHAG00000014649
UniProt:
A0A6P3VIN1
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Position
7:21627866..21657416
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AA seq
937 aa
AA seq
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MRLFLLAFFISCSCARGGCEPKIVNIGAVLSHKRFEQVFKDAVAQANIIYGKEKFKMNAI
SVTHKPNAIQMALSVCEDLISNQVYAILVSHPPQTNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAQVWFDMMREFQWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKNRNYENLDQQSYDYKRGPKAEKVLLFSQDTNLTALLKEAKELEARVFVLSA
SEDEAADIYKAARLLNMTGSGYVWLVGEREMTGKALSEAPDGLLGLQLINGKNETAHIYD
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWKTGPLFKRVLMSSKYADGLTGRVEFNDD
GDRRFAHYNIVNYQKTRPVTVGVYNGSQVVMNTQRKIIWPGGETEKPRGYQMSTRLKIVT
IHQEPFVYVKPTQEDGTCKPEYTLNGVLIKKVICTGPNETIPGRPTVPQCCYGFCIDLLI
KLAMTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTINNERA
QYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFS
PFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIV
ASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYR
HMEKHNYESAAEAIQAVRDGKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRK
DSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGI
VAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDRKVGRAEPDPKTKGSFRSVS
SSMASNIKRRRASKDTPYPTDITGQLNLSDPSVSTVV
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctttttctgttagcttttttcatctcttgttcttgtgcccggggtggctgcgaa
ccgaagatcgttaacatcggagcggttctcagccataagaggtttgaacaagtattcaag
gacgcggtggcccaagcaaacattatttatggcaaggagaagttcaagatgaacgcaatt
tctgtaacccataaacccaatgccatacagatggctctctctgtttgcgaagacctcata
tcaaaccaggtgtatgccatcttagtgagccaccctccacagaccaatgaccacctcacc
cccactccagtctcctacaccgccggcttctatcgcattcccgtggtggggctgaccact
cgcatgtccatatactctgataagagcatccacctgtcgttcctccggacggtcccgccc
tactcccaccaggcccaggtctggtttgacatgatgcgcgagttccaatggaaccacata
atcctcatcgtcagcgacgaccacgaggggcgcgccgcgcaaaagagactagagaccctg
ctggaggagcgtgagacaaagaataaaaacaggaactatgaaaacctcgaccaacagtcc
tatgactacaagcgaggacccaaggcggagaaagtgctgctgttcagccaggataccaac
ctgacagcactgctgaaggaggccaaggagctggaggcgcgcgtcttcgtcctctctgcc
agtgaagacgaagcggcggacatttacaaagcggcacgcctgctgaacatgaccggttca
ggctacgtgtggctggttggggagagagagatgactggtaaagctctgagcgaagctcca
gatggcttgctcggcctccagctgatcaatggcaagaacgagacggcccacatctacgac
gcggtggcggtggtggcccagtccatccaggagctctttgaaaaagagaacatcacagag
cctcctcgaggctgtgtgggcaataccaacatctggaagactggcccactctttaaacgc
gtgctgatgtcatccaagtacgcagatggcttaacgggccgcgtggagtttaacgatgac
ggcgaccgtcgcttcgcccactataacatcgtcaactaccagaagactcgtccggtgacc
gtgggcgtctacaacggctcacaagtggtgatgaacactcagcggaagatcatatggcca
gggggggagacagaaaaaccgcgaggctatcagatgtcaaccagactgaagatcgtcacc
attcaccaggagccgtttgtctacgtgaagcccacgcaagaggacgggacgtgcaagccg
gagtacacgctcaacggagtcttaatcaagaaagtcatctgtactggcccaaacgaaacc
attccaggcagacctactgtgccgcagtgctgctatggtttctgtatcgacctcctgatc
aagttggccatgacgatgaacttcacctacgaagtccatcttgtggctgatggaaagttt
ggcacccaggagcgagtgaacaacagcaataagaaggagtggaatggcatgatgggagag
ctcctgggtggcctggcagacatgattgtggctccactcaccataaacaacgagcgagcg
cagtacatcgagttctccaaaccctttaagtaccaagggcttactatacttgtcaaaaag
gaaatcccgcggagcacgctggactccttcatgcagccatttcagagcaccctgtggtta
ctggtgggtctatcggtccatgttgtggcggtgatgctctacctattagaccggttcagc
ccgtttggaaggtttaaagtaaatagtgaagaggaagaagaagatgccctcaccttgtcc
tccgctatgtggttctcctggggagtattattgaactctggaatcggagaaggtgcccca
cggagcttttcagcgaggattttaggtatggtgtgggcaggttttgccatgataatagta
gcatcctacactgccaatttggcagccttcctagtgctggatcggcctgaggagcgcatt
accggcatcaacgatcctaggctgcgaaatccatcagacaaatttatctatgccacagtg
aagcaaagttctgtggacatctactttcggcggcaagttgagctgagtaccatgtaccgc
cacatggaaaagcacaactacgagagcgccgccgaagcgatccaggctgtgcgagacggc
aaactccatgcctttatctgggattcagccgtgctggagtttgaagcctcgcagaagtgt
gacctggttacaacaggggagttattctttcgctctggatttggcataggcatgcgcaag
gatagtccttggaaacaaaacgtttccctagccattctcagctcccatgaaaatggcttt
atggaggacttggataaaacctgggtgagatatcaggagtgcgactcacgaagcaatgcc
ccagccacactcacgtttgagaatatggcaggcgtcttcatgttggtggctggaggcatc
gttgcaggaatcttcctcatcttcatcgagatcgcctacaagcggcacaaagacgcccgc
cggaaacagatgcagctggcatttgcagcagtgaacgtgtggaggaagaacctgcaggat
agaaaagttggtagagcagagcccgaccccaaaacgaaaggctcttttaggtccgtcagt
tcctccatggcctccaacatcaagagacgtagggcctccaaagacacgccctaccccacg
gatatcacagggcagctgaacctgtcggacccatccgtcagcaccgtggtttga
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