Clupea harengus (Atlantic herring): 105902340
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Entry
105902340 CDS
T09045
Symbol
ggps1
Name
(RefSeq) geranylgeranyl pyrophosphate synthase isoform X1
KO
K00804
geranylgeranyl diphosphate synthase, type III [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char00900
Terpenoid backbone biosynthesis
char01100
Metabolic pathways
Module
char_M00367
C10-C20 isoprenoid biosynthesis, non-plant eukaryotes
Brite
KEGG Orthology (KO) [BR:
char00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
105902340 (ggps1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
char01006
]
105902340 (ggps1)
Enzymes [BR:
char01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
105902340 (ggps1)
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
105902340 (ggps1)
2.5.1.29 geranylgeranyl diphosphate synthase
105902340 (ggps1)
Prenyltransferases [BR:
char01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
105902340 (ggps1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
105902340
NCBI-ProteinID:
XP_012685366
Ensembl:
ENSCHAG00000010643
UniProt:
A0A6P3W178
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All DBs
Position
13:complement(1602064..1631946)
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AA seq
317 aa
AA seq
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MDGDKGATTERILLEPYQYLLQLPGKQVRTKLSQAFNHWLNVPEDKLQVIIEVTEMLHNA
SLLIDDIEDSSKLRRGFPVAHSIYGVPSVINSANYVYFLGLEKVLMLENPEAVRVFTRQL
LELHRGQGLDIHWRDTYTCPTEEEYRSMVLQKTGGLFGLAVGLMQLFSEWRCDLKPLLNT
LGLYFQIRDDYANLASREYCENKSFCEDLTEGKFSFPTIHAIWSMPESRQVQNILRQRTE
NMDIKRYCVDYLEKVGSFAYTRQTLRDLEVEAYQLIRDLGGNPELEGLVEHLSHLYKEAE
PTSSGSGSGSSNSSSKA
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggatggggacaaaggagctacaactgagcggattcttttagaaccctaccagtatttg
cttcagctgccaggaaaacaggtgcgaaccaaattgtcccaagcttttaaccactggctc
aatgtaccagaggataaacttcaggtgatcattgaggtgacggagatgcttcacaatgcc
agcctgctcatcgacgacattgaggacagctccaagctccgacgcggtttcccagtggcg
cacagtatttacggcgtgccgtccgtcatcaactcggccaactacgtctacttcctgggc
ctggagaaggtgctgatgctagaaaacccggaggcggtgcgcgtcttcacccgccagctg
ctggagctgcaccgcggccagggtctggacatccactggcgcgacacctacacctgcccc
acggaggaggagtaccgctccatggtgctccagaagacgggcggcctcttcggcctggcc
gtgggtctcatgcagctcttctccgagtggcggtgcgacctcaagcccctgctgaacacg
ctgggcctctacttccagatccgggacgactacgccaacctggcgtcgcgcgagtactgc
gagaacaagagcttctgcgaggacctgaccgagggcaagttctcgttcccgaccatccac
gccatctggtcgatgcccgagagccggcaggtgcagaacatcctgcgccagcgcaccgag
aacatggacatcaagcgctactgcgtggactacctggagaaggtgggctccttcgcctac
acgcgccagaccctgcgcgacctggaggtggaggcctaccaactcatacgcgacctgggg
gggaaccccgagctggagggcctggtggagcacctcagccatctctataaagaggctgaa
cccacgagcagcggcagcggcagcggcagcagcaacagcagcagcaaggcttag
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