Clupea harengus (Atlantic herring): 105902501
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Entry
105902501 CDS
T09045
Symbol
grin1a
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1a isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04020
Calcium signaling pathway
char04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
105902501 (grin1a)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
105902501 (grin1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
char04040
]
105902501 (grin1a)
Ion channels [BR:
char04040
]
Ligand-gated channels
Glutamate (ionotropic)
105902501 (grin1a)
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
105902501
NCBI-ProteinID:
XP_031433301
Ensembl:
ENSCHAG00000025691
UniProt:
A0A6P8G9Z0
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Position
12:complement(18500681..18532661)
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AA seq
969 aa
AA seq
DB search
MRLFLLAVFFSCSCVRGGCEPKIVNIGAVLSQKRYEQVFKDAVTQANQVWGRDKFKLTAI
SVTHKPNAIQMALSVCEDLISSQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAHVWFDMMREFHWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKKRNYENLDQLSYDNKRGPKAEKVLQFSQETNLTALLLEAKELEARVIILSA
SEEEAASVYKAARFLNMTGSGYVWLVGEREMSGKALSEAPDGLIGLQLINGKNESAHIND
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWKTGPLFKRVLMSSKYPEGLTGRVEFNDD
GDRKFAHYSILNYQKSRLIQVGIYNGTQVVLNKQRKIIWPGGQTDTPRGFQMSTRLKIVT
IHQEPFVYVKPTSLEGTCDEEYTPNGVLIKKVICTGPNETIPGNITGRPIVPQCCYGFCV
DLLIKLAMTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTIN
NERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLL
DRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFA
MIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELS
TMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGI
GMRKDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLV
AGGIAAGIFLIFIEIAYKRHKDARRKQMQLAFTAVNVWRKNLQDKEPSGSQVLGGAATPS
LPSSSVETQDDRQSGRAEPEPKEKASFRSISTSLASSIKRRRASKDTQYPPTDITGQLNL
SDPSVSTVV
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgtttctgctagccgttttcttctcgtgctcctgtgtgcggggcggctgcgaa
ccaaagattgtgaacatcggagccgtgctcagccaaaaacggtatgagcaggtgttcaag
gatgcggtcacgcaagctaaccaggtctggggcagggacaaattcaagctgactgcaatc
tctgtcacccacaaacccaatgcgattcaaatggcgctttccgtctgtgaggacctcata
tcaagccaggtgtacgccatcctggtgagtcatcctccacagtccaatgaccacctcacc
ccgacgcccgtctcctacacggccggcttctaccgcatccccgtggtgggcctcaccact
cgcatgtccatctactccgacaagagcatccatctgtcattcttgcgaactgtacctccc
tattcccatcaagctcacgtttggtttgacatgatgcgcgagttccactggaatcacatc
atcctgatcgtcagcgatgaccatgagggccgagctgcccagaagaggctagagactctg
ctcgaggagcgtgagaccaagaataaaaaaaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggaccaaaggcagagaaagtcctccaattcagccaggagactaac
ttaactgctctgctgctggaggccaaagaactggaggcacgtgtcatcatcctgtcagcc
agcgaagaggaagccgcctcagtatacaaagctgctcgctttctgaacatgacgggctct
ggctacgtttggttggtgggagagcgagagatgtccggtaaagcactaagcgaagcgcca
gacggtctcattggcctgcagctgatcaacgggaagaatgagtcggcacacatcaacgat
gcagttgctgtggtagcacagtccatccaggagctgttcgagaaggagaacatcacggaa
cccccgcggggatgtgtgggcaacaccaacatctggaagacagggccactcttcaaaagg
gtgctgatgtcatcaaaatacccagaaggcctcacaggacgtgtggagtttaatgatgat
ggagaccggaagtttgctcactacagtatcctcaactaccagaaaagcagacttattcaa
gttggcatttacaatggaacacaggtggtgttgaacaagcagaggaagatcatatggccc
ggaggacagacagacacacccaggggttttcaaatgtcaactcgactaaagatagttact
atccaccaggagccttttgtgtatgtaaaacccacctctctggagggaacatgcgacgaa
gagtatacacctaatggagtcttaataaaaaaggtgatctgcactgggccgaatgagacc
atcccaggtaacataacaggacgcccaattgtacctcagtgttgctatggtttctgcgtt
gaccttctgattaagctggcaatgaccatgaactttacctatgaggtgcacctagtagca
gatggtaaatttggaacacaggagagggtcaacaacagcaacaagaaagagtggaatgga
atgatgggtgagcttctgggtggtctggcggacatgattgttgctccgctcacaataaac
aatgaacgagcccagtatatagagttctccaagccatttaaataccagggcctcaccatc
cttgtcaaaaaggaaatccctcgaagtacgctggactcgttcatgcagccctttcagagc
acactgtggctgttggtgggtctatcggtgcatgtggtggcggtgatgctttacctacta
gaccggttcagcccattcggaaggtttaaagtaaatagtgaagaggaagaagaagatgcc
cttacgttatcatcagccatgtggttctcctggggagtactactgaattctgggattgga
gaaggtgctccccgcagcttctccgcgcgaatcctgggcatggtgtgggcaggctttgcc
atgatcattgtggcatcgtacacagccaacctggctgccttcctagtgctggatcggcct
gaggagcgcatcaccggcatcaatgacccaaggctgaggaacccgtcggacaaattcatc
tacgccacagtgaaacagagctcggtggacatctactttcggcggcaggtggagcttagc
accatgtaccgccacatggagaagcacaactatgagagcgccgccgaagccatccaggct
gtgcgggacaacaagctgcatgctttcatctgggactctgcggtgctggagtttgaagcc
tcgcagaagtgcgacctggtgaccacgggagagctgtttttccgttcgggctttggcata
ggcatgcgcaaggacagcccttggaaacagaatgtgtccctggcaatcctcagttcccat
gaaaatggcttcatggaagacctagataaaacctgggtgagataccaggagtgtgactct
cggagcaatgcaccagccacactcacctttgagaatatggcaggcgtattcatgttggtg
gctggtggcattgcggcggggatcttcctcatcttcatagagatcgcttacaagcgccac
aaagacgcccgcaggaagcagatgcagctggccttcacggccgtcaatgtgtggaggaag
aacctgcaggacaaggaaccttctggaagtcaagttttggggggagctgcaacgccatct
ttaccctcttcctctgtagagacacaggatgatagacaaagtggtagagcagagcccgag
cccaaagagaaagcctcttttaggtccatcagtacgtccctggcttccagcatcaagaga
cgtagggcctccaaagatacgcagtacccacccacagacatcactgggcagctcaacctg
tccgacccgtctgtgagcacggtggtgtaa
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