Clupea harengus (Atlantic herring): 105907178
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Entry
105907178 CDS
T09045
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03020
RNA polymerase
char03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105907178 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
105907178 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105907178 (polr2a)
03400 DNA repair and recombination proteins [BR:
char03400
]
105907178 (polr2a)
Enzymes [BR:
char01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105907178 (polr2a)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105907178 (polr2a)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105907178 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
105907178
NCBI-ProteinID:
XP_031441143
Ensembl:
ENSCHAG00000019416
UniProt:
A0A6P8GQZ8
LinkDB
All DBs
Position
18:7277261..7294921
Genome browser
AA seq
1968 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYSETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMAECPGHFGHIELAKPVFHVGFVNKIMKILRCVCFFCSKLLVDSN
NPKIKDILGKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGMEQQDHDEDLTKEKGHG
GCGRYQPVIRRTGLELYAEWKHVNEDSQEKKILLNPERVHEIFKRISDEEDVILGMDPKF
ARPEWMILTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVSRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RMNLSVTTPYNADFDGDEMNLHLPQSLETKAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLDRGEVMNLLMFLSTWDGKVPQPAILKPRPFWTGKQIFSLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DVTRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGECVE
FQNLATLKPSHKAFEKKFKFDYSNERALRRTLQEDVVKDVLTNAHVQSALETEFEKMKED
REILRAIFPTGDSKVVLPCNLSRMIWNAQKIFRINPRTPTDLNPLRVIEGTHGLSKKLVI
VNGEDPLSRQAQQNATLLFNIHLRSTLCSRRMTEEFRLSTEAFDWLLGEIETKFNQAIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LVGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKRIII
TEDGEFKALQEWILETDGVALMRVLSDKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTSRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVPGPTGMF
YGSAPSPMSAMSPAMTPWNMGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSP
SYSPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5907 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccagcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcatcatcagtccagatgagcttaaacggatgtctgtcaccgaaggtggcatcaag
tactccgaaactacagagggaggccgcccaaagctgggcggtcttatggatccaagacaa
ggggtcatagagcgaacgggcaggtgtcagacatgtgcaggtaacatggcggagtgcccc
ggtcattttggccacattgagttggccaagccggtgtttcatgtcggcttcgtcaacaaa
attatgaagatacttcgctgtgtctgtttcttctgctccaagcttctagtggattctaat
aacccgaagatcaaggacatcctggggaagtcaaaggggcaaccacggaagcgcctgacc
catgtctatgacctgtgtaaaggcaagaacatttgtgagggtggtgaggagatggacaac
aagtttggaatggagcagcaggaccacgatgaagaccttaccaaggagaagggtcatgga
ggctgtgggcgttaccagcccgtcatccgtcggacaggcctggagctgtacgccgagtgg
aagcacgtgaatgaggactcgcaggagaagaagatcctgctcaacccggagcgtgtgcac
gagatcttcaagcgcatctccgacgaggaggacgtcatcctgggcatggaccccaagttt
gcccggcccgagtggatgattctcacggtgctgcccgtgccccctcttgctgtccggccc
gctgtggtcatgcagggctctgcccgtaatcaggatgacttgactcacaagctggctgac
atcgtcaagatcaacaaccagctgcggaggaacgaacagagtggcgccgcggcccacgtc
atagctgaggacgtgaagctactgcagttccacgtggccaccatggtggacaacgagctc
cctggtctgcccagagctatgcagaaatcgggccgtcccctcaagtcccttaaacagcgt
cttaaggggaaagagggccgcgtccgcggtaacctgatgggtaaacgtgtggacttctcg
gcccgaacggtcatcacgcccgaccccaacctgcagattgaccaagtgggtgtgcctcga
tccatcgcggccaacatgaccttccccgaaatcgtcacacccttcaacatcgacagactt
caagagctcgtgagtagagggaacagccagtacccgggagctaagtacatcatccgtgac
aacggcgaccgcattgacctgcggttccaccctaaacccagtgaccttcacctccagatt
ggttacaaggtcgaacgacacatgtgcgatggcgacatcatcatcttcaacagacagcct
acgctgcacaaaatgtccatgatggggcatcgtgtgcgaatcctgccatggtccaccttc
cgtatgaacctcagtgtgacgactccctacaacgctgactttgatggggacgagatgaac
ttgcatcttccccagtctctggagacgaaagcagagatccaggagctggccatggtgccc
cgtatgatcgtcaccccccagtccaacaggcccgtcatgggtattgtgcaggacacactc
accgccgtgcgcaaattcacaaagagagacgtcttcttagacaggggcgaggtgatgaac
ctgttgatgttcctctccacgtgggacggcaaagtgccccagccagccatcttgaagccc
cgaccgttctggacgggcaagcagatattcagtctcatcatccccggccacatcaacgtc
atccgcacccacagcacccaccccgacgaggaggacagcggcccctacaagcacatctcc
cctggggacaccaaggtggttgtggagaacggcgagctcatcatgggcatcctgtgtaag
aagtccctgggaacgtcggccggctccctggtccacatctcctacctggagatgggccac
gacgtcacccgcctcttctactccaacatccagacggtggtcaacaactggctgctcatc
gagggtcactccatcggtattggtgactccattgctgatgcaaagacttacttggacatt
cagaacaccatcaagaaggccaaacaggatgtgatagaggtgattgagaaagcccacaac
aacgagctggagcccaccccaggtaacacgctccgacagacctttgagaaccaggtgaac
cgaatcctgaacgacgctcgagacaaaaccggttcatccgcccagaagtccctgtctgag
tacaacaacttcaagtccatggtggtggccgggtccaaagggtccaaaattaacatctca
caggttattgctgtggtagggcagcagaacgtggagggtaagcgaatcccattcggcttc
aagcatcggacactgccccacttcatcaaagatgattacggccccgagagtagaggcttt
gtagagaactcgtacctggccggcctgacgcccaccgagttcttcttccacgccatggga
ggcagagagggtcttatcgacacagctgtcaaaacagctgagactggttacatccagcgt
cgtctgattaagtctatggagtctgtgatggtcaaatatgacgccacggtgcggaactcc
atcaaccaggttgtgcagctgcgctacggggaggacggcctggccggcgagtgtgtggag
ttccagaacctggccacactcaagccctcgcacaaggccttcgaaaagaagttcaagttt
gactacagcaacgagcgagccctccggcgcaccctacaggaggacgtggtgaaggatgtg
ctgaccaacgcgcacgtgcagagtgccctggagaccgagtttgagaagatgaaggaggac
cgggagattctgcgcgccattttccctacaggggacagcaaggtggtgctgccgtgcaac
ctgtccagaatgatctggaacgctcagaagattttccgcatcaacccgcggacccccacg
gacctcaacccactgcgggtgatcgagggcacacacggtctgagtaagaagctggtgatt
gtgaacggcgaagaccccctgagtcggcaggcgcagcagaacgccacgctgctcttcaac
atccacctgcgctccaccctctgctcgcggcgcatgacggaggagttccgcctcagcacc
gaagccttcgactggctcctcggagagatcgaaaccaaattcaaccaggccattgcacac
ccgggtgagatggttggtgccctggctgcccagtctctgggagagcctgccacccagatg
accctgaacaccttccattacgccggcgtgtcggccaagaacgtcacgctgggtgtgccc
cgtctcaaggagctgatcaacatctccaagcggcccaagaccccctcgctcaccgtcttc
ctggtgggccaagcggcgcgtgacgcagagagggccaaggacatcctgtgtcgcctggag
cacaccacactgcgcaaggtgactgccaacacggctatctactacgaccccaacccccag
aacacagtagtgactgaggaccaggagtgggtgaacgtctactatgagatgcccgacttc
gacgtgacccgcatttcgccctggttgctccgcatcgagctggaccgcaagcacatgact
gaccgcaaactgaccatggagcaaattgctgagaagatcaacgctgggttcggtgacgat
ctgaactgtatcttcaacgacgacaacgctgagaagctggtgctgcgaattcgcatcatg
aacagcgacgagaacaagttccaagaggatgaggaggtggtggacaagatggacgacgat
gtgttcctgaggtgcatcgagtccaacatgctgacagacatgactctgcagggtattgag
cagatcagcaaggtgtacatgcaccttccgcagactgacaataagaagcggatcattatc
acagaggacggcgagttcaaggccctgcaggagtggatcctggagacggacggcgtggcc
ctcatgcgcgtgctgagtgacaaggatgtggaccccgtcaggaccacctccaacgacatc
gtggagattttcaccgtgttgggtattgaggccgtgcgaaaggctctggagagggagttg
taccatgtgatctcctttgacggttcctatgtcaactaccggcatctggccctgctttgc
gacacgatgaccagtaggggtcatttaatggccatcacccgtcacggcatcaaccggcag
gacaccgggccgctcatgaagtgctcctttgaggaaacggtggatgtgctgatggaggcc
tcgtcgcacggcgagtgcgaccccatgaagggcgtgtcggagaacatcatgctgggccag
ttggccccttgcggcaccggctgctttgacctgctgctggatgctgagaagtgcaagtac
ggcatggagatccccaccaacatccctggcatcagcgttcctggaccaacgggcatgttc
tatggctccgccccgagcccgatgagcgccatgtctcccgctatgaccccctggaacatg
ggagcaactcctgcatatggtgcctggtcgcccagcgtgggaagtggaatgacccccgga
gcagcaggcttctctcccagcgcagcgtccgacgccagtggcttctccccgggttactcc
ccggcctggtccccaacgcctgggtctcctggatcaccggggccggccagcccctacatc
ccctcgccaggtggcgccatgtccccgaattactctccgacttctcctgcctacgagcct
cgctctcctggtggctacaccccgcagagccctggctattccccgacatcaccctcctat
tccccgacttctccatcctactcccccaccagtcccaactacagcccaacatccccctct
tattccccgacctctccctcctactcgccaacctccccgtcttattcgcccacatcaccc
agctactcgcccacgtctccatcttattcgccgacttctccgtcgtactccccgacatcg
ccctcctactcgcccacgtcgcccagctacagccccacgtcgcccagctacagccccaca
tcgcccagctacagccccacctccccgtcctactctcccacgtctccgagctactcgccg
acgtctccgtcttattcgccgacgtctccgtcgtactccccgacttcaccctcctattcg
ccgacgtcccccagctacagtccaacgtcacccaattataccccaacgtcacccagctac
tcgcccacctctccctcctacagccctacatctcccagttactcccccacctctccaaac
tacacgccgacgtccccaagctattccccgacctcgccctcttactctcccacctctccg
tcctactccccctccagcccgcggttcaccccacagtcacctacttacaccccgagctca
ccctcctacagcccaagctcaccttcctattcccccacctcccccaaatacacccccacc
tccccctcctacagtcccagttctccggagtacacccctacgtcgcccaagtactccccg
acctctcccaaatactccccaacatcgcccaaatacagccctacctctccgacttactcc
cccaccacccccaagtacagcccaacctcgccaacctactctcccacgtctcccacctac
accccgaccagccccaaatactctcccacctccccaacatactccccgacctcccccaag
tactcgcctacgtcccccacctactcgcccactagccccaagggctccacctacagcccc
acctctcctgggtacagccccacctcccccacctacagcctcaccagccctgccatcagc
cccgacgacagcgatgaggaaaactga
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integrated database retrieval system
