Clupea harengus (Atlantic herring): 105912926
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Entry
105912926 CDS
T09045
Symbol
vcam1b
Name
(RefSeq) vascular cell adhesion protein 1b
KO
K06527
vascular cell adhesion molecule 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
105912926 (vcam1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
char04090
]
105912926 (vcam1b)
04091 Lectins [BR:
char04091
]
105912926 (vcam1b)
CD molecules [BR:
char04090
]
Proteins
105912926 (vcam1b)
Lectins [BR:
char04091
]
I-type lectins (Siglecs)
105912926 (vcam1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
C1-set
ICAM1_3_5_D2
Ig_C17orf99
Izumo-Ig
Ig_4
ICAM_N
Motif
Other DBs
NCBI-GeneID:
105912926
NCBI-ProteinID:
XP_012697386
Ensembl:
ENSCHAG00000024596
UniProt:
A0A6P3WFR9
LinkDB
All DBs
Position
10:17448450..17461668
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AA seq
819 aa
AA seq
DB search
MAPALFWILFFPATVFSFVVEVSPKNAMFRVGDQEEVRCTMKDCAHTPEFSWRALEDRPM
YVKTTTRGSESVLTYESVKRDHENRLICTASCGGDSKQKQATVKVYSFPEAPVISGHERL
VLGKDATLSCKVLDVYPGQETELEWRDESGVLETHRGTESMRTLELNVTVTPTREGRNIT
CRALHHMRGVPAERSSIQTTVTLSVPYAPIEVQLSGSDEVEVGATLTLRCSAVGKPLPQV
QWRGPQSAGQWLQDEGGLELVVHNVTHANAGQYECQASNFLGQSKTSLFVIVQGPPRNTS
LTLSPRHPIREGESVTLSCRTVSVPVGEVRLLHDSKGKMTKMLSVKGSEINFTLPAAQLN
QSGLYRCEASNDYGNQTNSTQLTVTAYPLQVELLPVGVVTAEIGSTLSLTCQASGCPLPQ
LSWGAPSTEGVLRGNYTEGPRSELSLKVNDPAQEGVYTCHARCGSITASRQTRVNLFSFP
SVPIIERSGSQLEGGVSTFECAVTDVYPLESFRILWLYGEEELPQQTPPETTLTPAPTLT
ATLVSSVSMVMKLSHLGHPLTCQVELQMEGVPSGQRRRSAVTHIDVHHPPRNTSLTLSPR
HPIREGESVALYCRTVSVPVGEVRLLHDSEEGVMELLSVKGSEINFTLPAAQLNQSGLYR
CEASNPYGKQNNSTQLTVTAPPRNTTVEVLPSQRVMEGENVTICCRSISFPPPIVTLTKL
GNGTEISSWSGTFLLTNLTPSDAGDYQVNFTNDLGNNTQVFTISVMERRLTPSRNWEELL
IPAVVMGTTLAFAALLLDYVFRARRKGSYELAKCNPSTA
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggctccagctctattttggattttattttttccagcaactgtcttttcgtttgtggtc
gaggtgtccccaaaaaatgccatgttcagagtcggagaccaagaggaggtgaggtgtacc
atgaaggactgcgcgcacactcccgagttctcctggagagctttggaggacaggccgatg
tacgtgaaaaccacaactcgcggctcagagtcagtccttacctacgagtcggttaaaaga
gatcacgagaaccgtctgatatgcacagcttcatgcgggggagactcgaaacagaaacaa
gccacggtgaaggtgtactcgtttcctgaagccccggtgatatcgggccatgagcgtctg
gtcctgggcaaggacgccacgctgagctgtaaggtgctggacgtgtacccggggcaggaa
acggagctagagtggcgggatgagagcggtgtgttagaaactcacaggggcactgagagc
atgcgcaccttggagttaaatgtcaccgtcacccccacgcgtgagggccgcaacatcacc
tgcagagcattgcatcacatgcggggcgtccctgctgaaaggagctccatccagaccact
gtgaccctgtctgtgccctatgctccgattgaggtgcaactgtcagggtctgatgaggtg
gaggtgggggctacactcaccctcaggtgctcagcggtgggaaagccccttccccaggta
cagtggcgtggccctcagtccgccgggcagtggctgcaggatgaggggggcttggagctg
gtggtccacaacgtcacccacgccaatgctgggcagtacgagtgccaggccagcaacttc
ctgggccaatcgaagaccagcctcttcgtgatcgttcagggcccccccaggaatacgtcc
ctcacactgagcccccgccaccccatcagggagggggagtctgtgaccctctcctgcagg
acggtcagtgttcccgtgggggaggttcgtctgctgcatgactccaaggggaagatgact
aagatgctgtccgtaaaggggagcgagatcaacttcaccctacctgcggctcagctcaac
cagtctggactctaccgctgtgaggcctccaacgactacggcaatcagaccaacagcacc
cagctcaccgtcacagcttaccctctgcaggtggagctcctaccagtgggtgtggtcaca
gcagagataggctccaccctgtccctcacttgtcaggcttcggggtgccccctcccccag
ctgtcctggggagccccatcgaccgagggggtgctgagggggaactacaccgagggcccc
cgttctgagttgagcctgaaggtgaacgaccccgcgcaggagggcgtgtatacctgccac
gcccgctgcggctccatcaccgcctcccggcagacgcgggtgaacctgttctccttccct
agtgttcccatcattgagcgctctggatcccagctggaggggggagtctccaccttcgag
tgtgcggtgactgacgtgtacccccttgagtccttccgcatcctctggctgtatggagaa
gaagagctgccccagcagaccccccctgagacaaccctcacccccgcccccaccctcact
gccacccttgtgtccagcgtttccatggtgatgaagttgtctcacttgggccacccactc
acctgtcaggtggagctgcagatggagggcgtccccagtgggcagaggcggcgctcagcc
gtcacccacatagacgtgcaccacccccccaggaacacgtccctcacgctgagcccccgc
caccccatcagggagggggagtctgtggcgctctattgcaggacggtcagcgttcccgtg
ggggaggttcgtctgctgcatgactccgaggagggagtgatggagctgctgtccgtaaag
gggagcgagatcaacttcaccctgcctgcggctcagctcaaccagtctggactctaccgc
tgtgaggcctccaacccctacggcaaacagaacaacagcacccagctcaccgtcacagcc
ccgcccaggaacacgacggtggaggtgttaccttcccaacgggtgatggagggggagaac
gtcaccatctgctgccgatccatcagcttcccccctcccatcgtcaccctcaccaaactg
ggcaacggcaccgagatctcctcctggagcggaaccttcctactcaccaacctcacaccc
agcgacgccggagactaccaggtcaacttcaccaacgacctgggcaacaacacccaggtt
ttcaccatcagcgtgatggagaggagattaacaccctctaggaactgggaggagttgttg
atccccgccgttgtcatgggaaccacactggccttcgctgctctgctgctggactacgtt
ttccgggccagaaggaaaggctcctatgagctggccaagtgcaaccccagcacagcctga
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