Cohnella herbarum: HH215_09065
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Entry
HH215_09065 CDS
T08421
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
cheb
Cohnella herbarum
Brite
KEGG Orthology (KO) [BR:
cheb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cheb03009
]
HH215_09065 (rimO)
Enzymes [BR:
cheb01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
HH215_09065 (rimO)
Ribosome biogenesis [BR:
cheb03009
]
Prokaryotic type
ribosomal protein modification factors
HH215_09065 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
TRAM
Motif
Other DBs
NCBI-ProteinID:
QJD83308
UniProt:
A0A7Z2VHI8
LinkDB
All DBs
Position
complement(2028107..2029435)
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AA seq
442 aa
AA seq
DB search
MIERVSVVTLGCEKNLVDSEIMSGLIHQRGFSLVEKPEDATVIIVNTCGFIDAAKEESVN
TILNLAELKDTARLKALIVSGCLTQRYKKELMDEMPEIDGIVGTGDFHRINDIIDEALRG
RKPVYVGNPVFNYEENLPRLLTTPRHTAYVKIAEGCDNACTFCSIPIMRGKFRSRSVESI
LAEVKLLADQGVKEVSLIAQDSTNYGTDLYDGFKLPELLNRVSEVPGIEWVRLHYAYPGF
FTDELIEAIATNPKICNYIDMPLQHSEDSILKRMRRPGRQRDVRELVGKIRSRIPEVALR
TSMIVGFPGETEEDFERLCEFVREMKFDRLGVFAYSQEEDTPANRLPNQLSDEVKQFRQN
TLMEIQREVAKDNAAKYVGRTIEVLVERYDGRSDVYIGRSQYDAPEVDGEVYISNCPVQI
GQMSKVRITHAYEYDLSGEGIA
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgatagagagagtcagcgtcgtcacgcttggctgcgagaaaaatttagtcgattccgag
attatgtcggggcttattcatcaaagagggttttccttggtcgagaagccggaggacgcg
actgtaatcatcgtgaacacatgcggttttatcgatgcggcgaaggaagaatcggttaac
acgatcttgaatttggcagagcttaaggataccgcgcgtttaaaggcgttaatcgtatcc
ggttgcttgacccaacggtataaaaaagaattgatggacgagatgccggagatcgacggg
atcgtcggcacgggagattttcatcgaatcaacgatattatcgacgaggcgctacgcgga
cgcaaaccggtctatgtagggaaccccgtatttaattatgaagagaatctgccacggttg
cttacgactcctcgtcatacggcctacgtgaaaatcgcggaaggatgcgacaatgcctgt
acgttctgcagtattccgatcatgcggggaaaattccgcagccgttcggtagagtcgatt
ctggccgaggtgaaattgctggccgatcaaggcgttaaggaagtcagcttgatcgcgcag
gattctacgaattacggaaccgatttatatgatggattcaagcttccggaattgctgaac
cgcgtaagcgaagtgcctggaatcgaatgggtgcgcctgcactatgcttatccggggttc
ttcacggacgagctgatcgaggcgatcgcgaccaatcctaagatttgcaactatatcgat
atgcctttgcaacatagcgaggattctatcttaaagagaatgcgccgtcccgggcgtcaa
cgcgacgttcgcgagcttgtaggcaaaatccggtcgcgtattcccgaagtggcgcttcgc
acatcgatgatcgtcggtttcccgggagagacggaagaagatttcgagagattgtgcgag
ttcgttcgcgagatgaagttcgaccgcttaggcgtgttcgcgtattcgcaagaggaagat
actccggcgaatcgcttgccgaaccaactgtcggatgaagtgaagcagttccgtcagaac
acgttgatggagatacagcgcgaagtggcgaaagataatgccgcgaaatacgtcgggcgt
acgatcgaagtgctggtcgaacgttatgacggccgcagcgacgtatacattggccgcagt
caatatgatgccccagaggtggacggagaagtgtatatttcgaattgtccggtgcaaatc
ggccaaatgagcaaagttagaattactcatgcttacgagtatgatttgtcaggggaggga
atcgcgtga
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