Cryptosporidium hominis: Chro.30301
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Entry
Chro.30301 CDS
T00210
Name
(RefSeq) DNA-directed RNA polymerase II largest chain
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cho
Cryptosporidium hominis
Pathway
cho03020
RNA polymerase
cho03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cho00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Chro.30301
09124 Replication and repair
03420 Nucleotide excision repair
Chro.30301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cho03021
]
Chro.30301
03400 DNA repair and recombination proteins [BR:
cho03400
]
Chro.30301
Enzymes [BR:
cho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Chro.30301
Transcription machinery [BR:
cho03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
Chro.30301
DNA repair and recombination proteins [BR:
cho03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
Chro.30301
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
3412862
NCBI-ProteinID:
XP_666157
LinkDB
All DBs
Position
3
AA seq
1895 aa
AA seq
DB search
MSTALELNSPFSSKELKRVFSIEFGVLSPELIRKYSVLEIKVSDIYENGRPKSGGLNDPL
LGTTDYHILCETCHMDIKTCPGHFAHIELGKPMFHIGFITTVLKLLRCVCYACSKLFVDT
LDPKFKQIKRIRNPRLRLKKILEMRSSSSRCIISSDGSGCGFVQPTYSKEGYNLYINQNQ
DENRIIDDESVDSKRLLAAEEVLTIFKRISHDDMKILGFDPVKCNPSWFINTVIPIPPPT
VRPYVQFGSDRSEDDLTLKLQQIIKLNENLKKQIRIGSPEHIISEMSTVLQYHLITLINN
DLPGLPQSRTRSNRPIKSLRARLKGKDGRIRGNLMGKRVDFSARTVITGDPNLAVDQVGV
PYSIAMTLTYPEVVTPYNIEELKELVQRGPHEWPGATSIIQEDGTKVDLRFSNTSNNSNN
MLQYGWKVERHMKNDDLVLFNRQPSLHKMSIMGHRVKILPYSTFRLNLSVTSPYNADFDG
DEMNLHLAQSHETRSEIKNLMMVPRQIVSPQGNKPVIGIVQDSLLGIFLLTRKSTFLTRD
KFLQLLLCIPYWNGNIPPPAILRPQPLWTGKQIITVLLAFTTDLGEPIELNLMRDGSIVS
IKQSNNSSNTDKDDSKEAIVNNPWISELDNQVIIQKGEHICGVLTKKIAGSSSGSLIHIL
WNEIGPEKTGLFLTYTQMVVNTWLLEHGFTVGCQDIQPQNYTLEKIMNSLEGSKLQVQQI
IRRAQKGKLDCQPGKSLIESFEAQVNQELNSARELSGTIATENLDSSKNNIVAMVQCGSK
GSTINISQIMACVGQQNVEGKRIPFGFRDRSLPHFLKYDYGPESRGFVSNSYLSGLTPQE
VFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDCMVQYDRTVRNSNGDIIQFLYGEDG
MAGEFIEDQVIELLQMEAAMFQHKYRHNLEHPRWGSSWSGVQPSLIKNLQFDLESQNILN
SEYKQLVTDREQLGKDIFPDGETRQHLPININRIIQMAQQKFPQRVSDTSSSKDWGPVYI
IKKVESLLDKLLLWKNVGIINDEGNKSNFVFDSIIAEVQKNATTLLGIHIRSSLASKKIL
EVDRLGPTAFEWILGEIEHQFYRSLAHSGEMVGTIAAQSIGEPATQMTLNTFHFAGVGSK
NVTLGVPRLRELINVAKNVRTPTLTVYLESGIANDQEQAKDVLTLLEHTTLQNITTIAHI
LYDPEQDKTIVEADKSWVSDYYEFPDDADITNRLGTWLLRIQLNNKLVTDKKLSMKEIGD
KILMEFSKDELDCIWTDDNSDELVLRLRIKNIEPTNNICDNIHSSEENDSISPSITSGVE
EHKFLEKLMTECLSQITLRGINNIKKVYMKEEQVSRYDSISQKMVRDNQWVLDTDGCNLE
AVLCHTAIDSTRTISNDITEVFSVLGIEAVRRALLRELRTVISFDGSYVNYRHLALLCDN
MTQKGHLMSITRHGINRVDKGPLQKCSFEETVEVLMDAAMFGETDYLNGVSENVMLGQLA
PYGTACFDVLIDPDKLRDTATHLEIHGEFTKIGKFSTLSQTTRSYSDSGAFESDSFESPM
SPLSPMSPLYQSYEPMSPMISGQFSPVQMTPRSPMSPVSPGGIFSPVPYSPMSPSSPLMD
YTPTSPIYAASSPTYNTEVSERARKKYKVNNTLSSYSPSSPLNSDNKISNISPDLSPTSP
HYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSP
TSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPSSPHYSPTSPQ
YSPTSPNYNPASPNYSPTSHYSPTSPNYNPTSPNYSPSSPNYISNNSGSPGYSPSSPQYD
PIAVTSVPRSPSYSVGKMVDAEYSPSSPLDETKNS
NT seq
5688 nt
NT seq
+upstream
nt +downstream
nt
atgtccacagcattggagttgaactctccatttagcagtaaagagttaaaaagagtattt
agtattgaatttggcgtcctttcacccgaactaatacgcaagtattccgtactcgagatt
aaagtatcagatatttatgaaaatgggagacctaaatcaggtgggcttaacgacccattg
ttgggcacaacagactatcatattctttgcgaaacttgtcatatggatataaaaacatgt
cctggtcactttgcgcatattgagcttggaaagcccatgtttcatatcggatttattact
acagtacttaagcttctcagatgcgtgtgctatgcatgctctaagttattcgttgataca
ttagatcctaagtttaaacaaataaaacgcattaggaatccaagacttagattgaagaaa
attctagaaatgagaagctcttcatccagatgtataatttctagtgacggctctggatgc
gggtttgtccaaccaacctattcgaaagaaggatataatttgtatattaatcaaaatcaa
gatgaaaacagaattattgacgatgaaagtgttgattcgaagaggttgctagccgcagaa
gaggtacttacaatttttaaaaggatatctcacgatgacatgaagattcttggatttgat
cctgtaaaatgtaatccttcttggtttattaatacggtaataccgattcctcctccaact
gttagaccatacgttcaatttggaagcgatcggagcgaagatgatttgactttaaaacta
caacaaataatcaagttgaatgaaaatcttaaaaaacagattcgtattgggtctcctgaa
catattattagtgaaatgtcaactgtccttcaatatcatttaattacacttattaataat
gacttgcctggtttgcctcaatctagaacaaggagtaacaggccaatcaaatctctcaga
gcacgtctaaaaggcaaggatggtcgcatacgcggtaacttaatgggtaaaagggtagat
ttctctgcaagaacagtaatcacaggcgatcctaacttagctgtggaccaagttggagtt
ccatattctattgctatgacacttacttatcctgaagttgttacaccatataatatagaa
gagctaaaggagttagtacaaagaggaccgcatgaatggccaggagcaactagtattatt
caggaggatggaacaaaggttgacctaaggttttcaaatacctcaaataattcgaataat
atgcttcaatatggatggaaggttgaaaggcatatgaagaatgatgatctagtgctcttc
aacaggcagcctagtctacataagatgagcattatgggccatcgtgtaaaaattttacct
tattctacatttagacttaacctttcggtaacttcgccatataatgcagactttgatgga
gatgaaatgaaccttcacctggcgcagtcgcatgagacccgatctgaaatcaaaaacttg
atgatggttccgagacaaatagtttctcctcaaggtaacaaacccgtaataggcatagtt
caggattcattacttggaatttttcttcttacgagaaaatcaacttttttaactagagat
aaatttttacagcttttattatgtattccttattggaacggaaacattcctcctcctgca
atacttaggcctcagcctttatggactgggaaacagattattacagtgctacttgcattt
acaacagacttgggcgagccaattgaattgaatttaatgcgagatggtagtattgtatcg
attaagcaatctaataactcttcaaatacagataaagatgattctaaagaagctatagtt
aacaatccttggatatcagagctggacaatcaagtaataatccagaagggagagcatatt
tgcggagtactcacaaaaaaaattgcaggatcttcttcaggttcactaattcacatttta
tggaatgaaattggcccagaaaaaactggattgtttttgacatatactcagatggtagtt
aatacatggcttctcgagcacggcttcactgtaggatgtcaggatattcaaccacaaaat
tacaccttggaaaaaataatgaactctttagaaggctcaaagttacaagttcaacagatt
atcaggcgcgctcagaaaggtaaacttgattgtcagccaggtaagagcctaattgaatct
tttgaggctcaagttaatcaggaattgaatagtgcacgtgaattgtctggtacgattgca
actgagaaccttgattcttctaaaaacaatattgttgcaatggtccaatgtggaagcaaa
gggtcaactataaatatttcacagattatggcatgcgttggacagcaaaatgttgaaggt
aaacgcattccatttggatttagggatagaagcttgccacactttttgaaatatgattat
gggcctgaaagtcgtggttttgtttcgaactcatatctttcaggtcttacaccccaggaa
gttttttttcatgctatgggaggcagagaaggaatcattgatactgcgtgtaaaacttca
gaaacagggtatatacaaagaaggctaataaaggcaatggaagattgtatggtgcaatat
gatagaactgttaggaatagtaatggcgatattattcaattcctttatggagaagatgga
atggcaggagagtttattgaggaccaagttatcgaactactacagatggaggcagcaatg
ttccagcacaagtatcgtcacaatcttgaacatccaagatggggttctagctggtctgga
gtccaaccttccttgataaaaaatctacaatttgatctagaatctcagaatatactgaac
tccgagtataaacaacttgtaacagaccgcgagcagcttgggaaagacattttcccagat
ggtgaaacaagacaacatcttccgattaatatcaatagaataattcaaatggctcaacaa
aagttcccacaaagagtaagtgatacgtcatctagcaaggattggggaccagtttacatc
ataaaaaaggtcgaatcattgcttgataaactattgctttggaagaacgtcgggattatc
aatgatgaaggcaataaatctaattttgtatttgatagtattattgctgaagttcaaaag
aatgccacaactttactagggatacatattagaagctctttagctagtaaaaaaatatta
gaggttgataggcttggaccaactgcatttgagtggatacttggggaaattgagcatcag
ttttatagaagtcttgcacactccggtgaaatggttggcactatagcagcacagtcaatt
ggagaacctgcaacgcaaatgacattaaataccttccactttgctggtgtgggctcaaaa
aatgtaactctaggtgttccaaggctgagagagctaattaatgttgcaaaaaatgttaga
acaccaaccttaactgtctatcttgaaagcgggattgcaaacgaccaagaacaggcaaaa
gatgtattaacattattagaacatacgacgttacaaaacattacgactattgcgcacatt
ttatatgacccggaacaagacaagactattgtcgaagcagataagagttgggttagtgat
tattatgaatttccggatgatgcggacattacaaacagacttggtacttggctattaaga
attcagttgaataacaagcttgttactgacaaaaaactgtcaatgaaagaaattggtgac
aaaattttaatggaatttagtaaagatgagttggattgtatttggactgacgataactca
gatgaacttgtattaagactccgaattaaaaacattgagcccactaataatatttgcgat
aatatacattcttctgaagaaaacgactcgatttctccttcaattacgtcaggagtcgaa
gagcataaatttttggaaaaactaatgacggaatgtctttctcaaattacccttagaggg
ataaacaatattaagaaggtttatatgaaagaggaacaggtttctagatatgatagtatt
agtcagaaaatggtgagagacaaccaatgggtgcttgatacagatgggtgtaatcttgaa
gcagtgctctgccacacagcaatagatagtacgagaacaatctcaaacgatataactgaa
gtctttagcgtattagggattgaagccgtaagaagagctcttcttagagagctgagaaca
gtcatttcatttgatggaagttatgtaaactataggcacttagcactactctgcgataat
atgactcaaaaggggcacttaatgagtataacaagacatggtatcaatagagttgataag
ggcccgcttcaaaagtgcagttttgaagagacagttgaagtcttaatggatgctgctatg
tttggagaaactgattaccttaatggtgtaagcgaaaatgttatgcttgggcagcttgct
ccatatggaactgcatgctttgacgtcctaattgaccctgataaacttagggatactgct
actcatcttgaaattcatggagaatttaccaaaatcgggaaattctctacactttctcaa
acaacaagatcttattccgacagtggagcatttgaatcagattcttttgaatctccaatg
tcgcctctttctccaatgtctccgctttaccaatcttatgaaccaatgtcccctatgatt
tctggtcagttttctcctgttcaaatgactccaagatctccaatgagtccagtttcacca
ggagggatattcagcccagttccatactctcctatgagtccatcctcaccacttatggat
tacacgccaacttctcccatttatgcagcaagtagtccaacatacaatacagaggtttct
gagagggctagaaaaaagtataaggttaacaatacacttagctcatactcaccatcttca
ccattaaattcagacaacaaaataagtaacataagtccagatttatcaccaacatcaccg
cattattcgccaacatctccacattattcaccaacatctccacattattctccaacatcg
ccacattattctccaacatcgccacattattcaccaacatcaccacattattcaccaaca
tcaccacattattcaccaacgtcaccacattattcaccaacatcaccacattattctcca
acatctccacattattctccaacatcgcctcactattctccaacatcgcctcactactct
ccaacatcgccacattattcaccaacatcaccgcattactctccaacatcaccacactat
tctccaacttcacctcactattctccatcatcaccgcattattctccaacttcgcctcaa
tactcacccacatcacccaactacaaccccgcatcgccaaattattctcccacctcacac
tactctcctacctcgccaaattataatcctacctctccgaattattctccatcttcaccc
aattatatttcaaataactctggctctcctggatactcgccatcgtcacctcaatatgat
cctatagcagttacttcggtccctagatctccatcctattctgttggaaaaatggtagac
gctgaatattcaccgtcttcccctctagacgaaacaaagaattcataa
DBGET
integrated database retrieval system
