Citrobacter sp. TSA-1: HF677_000535
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Entry
HF677_000535 CDS
T09275
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
cib
Citrobacter sp. TSA-1
Pathway
cib00540
Lipopolysaccharide biosynthesis
cib01100
Metabolic pathways
cib01250
Biosynthesis of nucleotide sugars
Module
cib_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
HF677_000535 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
cib01005
]
HF677_000535 (rfaD)
Enzymes [BR:
cib01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
HF677_000535 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
cib01005
]
Core region
HF677_000535 (rfaD)
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GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
KR
Ldh_1_N
Motif
Other DBs
NCBI-ProteinID:
QKE18225
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Position
complement(112625..113557)
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AA seq
310 aa
AA seq
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MIIVTGGAGFIGSNIVKSLNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQI
MAGEDFGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATY
GGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGS
MASVAFHLNTQLNNGETPKLFEGSENFKRDFVYVGDVAAVNLWFLENGVSGIFNLGTGRA
ESFQAVADATLAYHKKGSIEYIPFPEKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVT
EYMAWLNRDA
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgatcatcgttaccggcggcgcgggctttatcggcagcaacatcgtcaagtcattgaat
gataaaggcatcaccgacatcctggtggtggacaaccttaaagatggcaccaagtttgtt
aacctggtggatctgaatattgctgactacatggacaaggaagacttcctgatccagatt
atggccggagaagatttcggcgatatcgaagcgattttccacgaaggcgcatgctcctcc
actaccgagtgggacggcaagtatatgatggataacaactatcaatactccaaagagctg
ttgcactactgcctggagcgtgaaattccgttcctgtatgcgtcctctgccgccacctac
ggcggccgcacttctgatttcatcgaatcccgtgaatatgagaaaccgctgaacgtttac
ggctactcaaaattcctgttcgacgagtacgttcgtcagatcctgccagaagccaattct
cagattgttggcttccgctatttcaacgtctacggaccgcgtgaaggccataaaggcagt
atggcgagcgtcgctttccacctcaacacccagctcaacaatggcgaaacaccaaaactg
ttcgaaggcagtgaaaacttcaagcgtgatttcgtttacgtaggcgatgtggctgcggtg
aacctgtggttcctggaaaacggggtttccggcatctttaaccttggtaccggtcgtgcg
gaatctttccaggccgttgccgatgcaacgcttgcgtaccacaaaaaaggcagcattgag
tacatcccattcccggaaaaactgaaaggtcgctatcaggcgtttacccaggccgatctg
actaatctgcgtgctgcgggctatgacaagccgtttaaaaccgttgctgaaggtgtaacg
gaatatatggcctggctgaaccgcgacgcgtaa
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