Citrobacter sp. TSA-1: HF677_011060
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Entry
HF677_011060 CDS
T09275
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
cib
Citrobacter sp. TSA-1
Pathway
cib02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HF677_011060 (pdeR)
Enzymes [BR:
cib01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
HF677_011060 (pdeR)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
GGDEF_2
GCH_III
Motif
Other DBs
NCBI-ProteinID:
QKE22533
LinkDB
All DBs
Position
complement(2309416..2311407)
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AA seq
663 aa
AA seq
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MKDVRELVTLYSYVGTHNPYWRLSEDCNILHFSIDEASEADQTIELLPEQADRIREMTVI
TSSLLMTLPIEDDDIPVHLVGRKINKREWAGSASAWDDTPSVARDLAHGLSFAEQVVSEA
NSVIVILDRMGNIQRFNRLCEEYTGLKEREVIGQSVFTLFMSRREAAASRRNIEVFFREG
NSYEVERWVKTCKGQRLFLFRNKFVHNGSGKNEIFLICSGTDITEERRAQERLRVLANTD
SITGLPNRNAIHELISNAIENAGDTQVGIAYLDLDNFKKVNDAYGHMFGDQLLQSVSLAI
LSCLEDNQILARFGGDEFIVLATETSQGTLEATASRILTRLRQPFRIGLIEVYTGCSIGI
SLAPQHGQDCESVIRNADTAMYTAKEGGRGQFCVFSPEMNQRVFEYLWLDTNLRKALDND
QLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLEFISYAEESGLIVPLGRWVILDVV
RQVAKWRDKGINLRVAVNVSARQLADQTLFTALKQVLHELNFEYCPIDVELTESSLIENE
QLALSVIQQFSQLGAQIHLDDFGTGYSSLSQLARFPLDAIKLDQTFVREIHKQSISQSLV
RAIVAVAQALNLQVIAEGVESAKEDAFLTKNGVNERQGFLFAKPMPAAAFERWYRRHLSK
KMR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacgtccgggagctggttacgttgtatagctatgtgggcactcataacccctac
tggcgtttgtcagaggattgcaacatcctgcatttctctatcgacgaagcgtcagaagct
gatcagaccatcgaattattacctgaacaagccgatcgcattcgcgaaatgacggtgatc
acgtcaagtctgttaatgacgttgcccattgaagatgacgacattcccgtgcatctggtc
ggtcgaaaaatcaataagcgcgaatgggccggtagcgcatccgcctgggatgacacccct
tccgtcgcccgcgatctggcccacggcctctcttttgccgaacaagtcgtttccgaagcc
aattccgttattgtcattcttgaccgcatgggcaacattcagcggtttaatcgcctgtgc
gaagagtacaccggcctcaaagaacgtgaagtcattggtcaaagtgtattcacattattt
atgagccgtcgtgaagcggcggcttcacggcgcaatattgaggtcttttttcgcgaaggt
aactcgtatgaggttgaacgctgggtcaagacctgcaaaggccagcgtctgtttcttttt
cgcaataaatttgtgcataacggtagcggcaagaacgaaatttttctgatctgttccggg
accgatatcactgaagaacgccgcgcgcaggaacgactgcgggtgttggcaaataccgac
tccatcactggattaccaaaccgcaacgcaattcatgaactgatcagtaatgcgattgag
aacgcgggcgatacgcaggtcggtattgcgtacctcgatctggataacttcaaaaaggta
aacgatgcctacgggcatatgtttggcgatcagctactacaaagcgtgtcgctggcaatc
ctcagttgcctcgaagacaaccagatcctggcgcgatttggcggcgatgaattcattgtt
cttgccaccgaaacatcccagggcacactggaagccaccgcatcacgcattctgacgcgc
ctgcgccagcccttccgcatcggtctgattgaagtctataccggatgctctattggtata
tccctcgcgcctcagcatggccaggactgcgagagcgtcattcgtaacgcggatacagcc
atgtacaccgcgaaagaaggtggccgtgggcagttttgtgttttttctccggaaatgaat
cagcgggtatttgaatatctgtggctggatactaatctgcgtaaggcactggataacgat
caactggttatccattatcagccaaagataacctggcgcggtgaagtgcgcagcctggag
gcgctggttcgctggcaatctccggaacgcggcctcattccaccgctggagtttatctcc
tacgccgaagaatcggggctcatcgtcccgctggggcgttgggttattctcgacgttgtg
cgccaggtcgcgaaatggcgcgacaagggaataaacctgcgcgtggcggtaaacgtttct
gcccgccagctcgccgaccagacgctgtttaccgcacttaagcaggtacttcacgagctc
aactttgagtattgccccatcgatgttgaattaacggaaagcagtttgatagaaaatgag
caactggcgttgtcagtcattcagcagtttagccagttaggagcgcaaatccatttggat
gattttggtaccggttattcgtcgctgtctcaactggcccgcttcccgctagatgccatt
aaactggatcagacctttgtcagagagatccacaaacaatccatttcacaatcgctggta
cgggccatagttgcggtagcacaggcgctcaacctgcaggtcatcgccgaaggcgtggaa
agcgcgaaagaggatgcgtttctgaccaaaaatggcgtcaatgaacgtcaggggttttta
ttcgccaaaccaatgccagccgccgcatttgaacgttggtatcgccgccatctgagtaaa
aaaatgcgctaa
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