Citrobacter sp. TSA-1: HF677_019010
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Entry
HF677_019010 CDS
T09275
Symbol
ldcC
Name
(GenBank) lysine decarboxylase LdcC
KO
K01582
lysine decarboxylase [EC:
4.1.1.18
]
Organism
cib
Citrobacter sp. TSA-1
Pathway
cib00310
Lysine degradation
cib01100
Metabolic pathways
cib01110
Biosynthesis of secondary metabolites
cib01120
Microbial metabolism in diverse environments
Module
cib_M00956
Lysine degradation, bacteria, L-lysine => succinate
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
HF677_019010 (ldcC)
Enzymes [BR:
cib01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.18 lysine decarboxylase
HF677_019010 (ldcC)
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Gene cluster
GFIT
Motif
Pfam:
OKR_DC_1
OKR_DC_1_C
OKR_DC_1_N
PKcGMP_CC
Motif
Other DBs
NCBI-ProteinID:
QKE21653
LinkDB
All DBs
Position
complement(3956709..3958847)
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AA seq
712 aa
AA seq
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MNIIAIMGPHGVFYKDEPIKELERALQQQGFQIIWPQNSVDLLKFIEHNPRICGVIFDWD
EYSLDLCSDINQLNEYLPLYAFINTHSTMDVSAHDLRMALWFFEYALGQSEDIATRIRQY
TSEYLDNITPPFTKALFTYVKEGKYTFCTPGHMAGTAYQKSPVGCLFYDFFGGNTLKADV
SISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIVGMYAAPSGSTLLI
DRNCHKSLAHLLMMSDVVPIWLKPTRNALGILGGIPRREFTRASIERKVEETPQALWPVH
AVITNSTYDGLLYNTNWIKQTLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIF
ETQSTHKMLAALSQASLIHIKGDYDEETFNEAFMMHTSTSPSYPIVASIETAAAMLRGNS
GKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPERVDEAECWPVAPGEDWHGFVDAD
ADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIG
IDKTRAMGLLRGLTEFKRSYDLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRQH
DLSGLMLRAFDTLPEMKMTPHQAWQRQIKGEVETVALDQLVGRISANMILPYPPGVPLLM
PGEMITAKSRAVLDFLLMLCSVGHHYPGFETDIHGAKLGEDGVYRVRVLKMA
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcattgccatcatgggaccgcatggcgtcttttataaagatgagcccatcaag
gaacttgagcgcgcgctgcaacagcaggggtttcagattatctggccgcagaatagcgtc
gacctgcttaagtttatcgaacataacccacgaatttgcggtgtcatttttgactgggat
gaatacagcctggatctgtgcagtgacatcaaccagctcaacgagtacctcccgctctac
gcctttattaatactcattcgacgatggatgtcagcgcgcacgacctgcgcatggcactg
tggttttttgagtatgcgctgggccagtctgaagatattgcaacccgcatccgtcagtac
accagcgaatacctcgataacatcacgcctcctttcaccaaggcgctgtttacctatgtg
aaggaaggaaagtacaccttctgcacacccggacatatggcgggaacggcgtatcagaaa
agcccggtaggctgcctgttctatgatttctttggcggcaatacgctgaaggccgacgtg
tctatttccgtgactgaactcggatcgctgctggatcataccggcccgcatctggaagcg
gaggagtatatcgcgcgcacctttggtgccgagcagagctatatggtcaccaacggcacc
tcgacgtcgaacaagattgtcggcatgtatgccgcgccttcaggcagtacgctactgatt
gatcgcaactgtcataagtcgctggcgcatttgctaatgatgagcgatgtggtgccaatc
tggctgaagcctacgcgcaatgcgctggggatcctcggcggtatacctcgtcgggaattc
acccgcgcaagcattgaacgcaaggtagaagagacccctcaggcgctatggccggtacac
gcggtgatcaccaattccacctatgacggcctgttgtataacaccaactggatcaagcaa
accctggatgtgccctccattcattttgattctgcttgggtgccgtatacccattttcac
ccgatctatcaggggaaaagcgggatgagcggcgaacgggtgccggggaaagtgattttt
gaaacccagtcaacccacaagatgctggcggcactatcacaggcttcactgatccacatt
aagggcgactacgacgaagagacgttcaacgaagcctttatgatgcacacttccacttct
ccgagctacccgattgtcgcgtcgatagaaacggcggcggcaatgctgcgtggcaattca
ggcaagcggttaatcaatcgttcggtggagcgggcgctgcatttccgtaaagaagtgcag
cggctacgcgaagagtcggatggctggttctttgatatctggcagccggaaagagtcgat
gaagcggagtgctggccggtagcgcctggtgaagactggcacggatttgttgatgctgac
gccgaccatatgttcctcgacccggtgaaggtcaccattcttacgccgggaatggatgaa
cagggaaatatgagtgaagaggggatccctgcggcgctggtggcgaaattccttgatgag
cgcggcgtcgttgtcgagaaaacgggaccgtataatctcttgttcctgttcagtattggc
attgataaaacccgggcgatggggctactgcgcggcctgacggaatttaaacgctcgtac
gatctgaatttacgcgtgaaaaatatgctgccggatctgtatgccgaggatcccgatttc
tatcgtaatatgcgtattcaggatctggcgcaggggatccataagctgatccgccagcac
gatctctccgggctgatgctgcgggcatttgataccttaccggaaatgaaaatgaccccg
caccaggcctggcagcggcagatcaaaggtgaggtcgaaacggtggcgctcgaccaactg
gtggggcgcatttctgccaatatgattctgccttatcctcccggtgtgccgctcttgatg
cccggggaaatgatcacggccaaaagtcgggctgtactcgattttctgctgatgttgtgt
tcagtgggccatcactatcctggatttgaaaccgatatccatggcgctaaactgggtgaa
gatggcgtgtatcgcgtgcgagtcctaaaaatggcatga
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