Citrus x clementina (clementine): CICLE_v10011737mg
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Entry
CICLE_v10011737mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CICLE_v10011737mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10011737mg
Enzymes [BR:
cic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
CICLE_v10011737mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CICLE_v10011737mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
FtsK_SpoIIIE
ABC_tran
AAA_29
ATP_bind_1
Motif
Other DBs
NCBI-GeneID:
18039522
NCBI-ProteinID:
XP_006428629
UniProt:
V4UQR9
LinkDB
All DBs
Position
Unknown
AA seq
441 aa
AA seq
DB search
MAYGGGVPAAMSGLASASASTIKLVKLERESELRIEVGEMPLRLRLLNGNAEIYGTELPP
EIWLTFPPRLKFAVFTWYEATIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHAKASP
SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA
TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAG
MVINTMGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG
GVVSRNSKVRQKARSYRIREYFYGLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIG
ADPVANPLRIVPVNVDQELLHLVLAVSYAKDADQIISSNVAGFIFVTNVDTQRKTITYLA
PSPGMLPSKYLIAGTLTWLET
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcttacggcggcggcgtaccagcggcgatgagtggcttggcttcggcttcggcttca
acaataaagctagtgaaattggagagagagagtgagctgagaattgaagtgggtgaaatg
ccattgcggcttcggcttcttaatggtaatgctgaaatttatggcactgaattgccccct
gaaatctggctcacttttcctcctcgtctcaaatttgctgtatttacttggtatgaagcc
actattgaaatggatggcactcctgaaactgattatacagctgatgagacgcccatggtt
agttatgtaaacgtgaatgcagtgctagaaggaaggaggaaccatgctaaagcatcgcca
tcgaaggactctgatgcttctcagggtcctcgagtaattgttgtaggacctacagattcg
ggtaaaagcacactgtcgaggatgcttcttagttgggcagcaaaactaggttggaaacct
acttttgttgacttggatattggccaaggagcaataacaattcctggatgcattgctgct
actccaattgaattgcccattgatcctgtggaaggaatccctcttgaaatgcctcttgtt
tacttctttggacacgcaactcctagcaacaatgtagagttgtacaaagttcttgtgaag
gagcttgcccaaatgctggaaaggcagtttaatggtaatgcggaatctcgagcagctggc
atggtgataaacaccatggggtggatagaaggtgtagggtacgagttgcttctccatgcg
attgatacattcaaagccaatgttgtcttggttttgggtcaggaaaaacttttcagcatg
ctgagggatgtattaaagaacaggcctaatgtggatgttgtgaaacttcaaaagtcgggt
ggtgttgtatcccgaaattcaaaagttcgtcaaaaggccagaagttataggataagggaa
tatttttacggcctcacaaatgatctttccccgcatgctaatgttgctaatttcagcgat
ttcctagtctatcgaattggaggaggaccacaggccccaagatcagctctgccaattgga
gctgatcctgttgccaaccctctaagaatagttccagtgaatgttgaccaggagttgctc
catcttgttcttgctgtttcatatgcaaaagacgctgatcaaattatctcaagcaacgtg
gctggttttatatttgttacaaacgtcgacacacaaaggaagacgattacatatctcgca
ccctcacctgggatgctcccaagcaaatatctgatcgcaggaacattgacatggcttgaa
acgtga
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