Ctenopharyngodon idella (grass carp): 127494751
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Entry
127494751 CDS
T08802
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
127494751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127494751
Enzymes [BR:
cide01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
127494751
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
127494751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
Motif
Other DBs
NCBI-GeneID:
127494751
NCBI-ProteinID:
XP_051716856
LinkDB
All DBs
Position
14:complement(1373492..1398974)
Genome browser
AA seq
1689 aa
AA seq
DB search
MQFSKETPWRRLEGMSFGMYSAEELRKLSVKTITNSLLLDNVGSAAPNGLYDLALGPADN
KEICSTCMQDFDGCPGHFGIIELPLPVYNPLFFDKLFLLIRGSCLTCHMLKCPRVAIHLL
LGQLKLLDVGALQEVYELENVLSQFLNVNAQPTTLELREFLDRFVNPILEANEDKKHMAP
VKHICEKRSSLINNFWKIHMGLRKCMNCKTGRDIVRKEHNSKIIVFKSMIKGSEQTDDTK
LTERGFLTPSLAREHILRLWEIEGFFLNHLLSSEKGFNPELFFLDLLVVPPCKYRPINRL
GDQMFTNGQTVNMQSVLKDNFSIQKLLALIAAEKINNTEDTQTKMDESSEAVESSAMDQS
FIMGIPGLTLTDKLYNIWIRLQSHVNIVFDSDMDKLITEKFPGVRQLLEKKDGLFRKHMM
GKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPLVHPG
ASMVINEDGTRTILSKNLTQREAVAKQLLTPTTGQHKIPMKIVNRHIKNGDVLLLNRQPT
LHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVSTD
QQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTWDQYTALIYRGLTDKMGRVKLLRPAL
LKPVPLWTGKQVVSTLLLNVIPENCIPLNLTGRAKIPSKAWVKEPPRSAPGYKPETMCES
QVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYRGF
TLGVEDILVQDGANKQRRKIIQKSVTCGSKALQAAFNLPASAGDAEARERWQDAHLNSDQ
RDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQLMVQSGAKGSTVNTMQISCL
LGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFHCMAGREGL
VDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQLR
QFPFIKDNYEVIRKSKCLDEVLAKMDSQAAFNHFKAIRRWKAKHERVSPRDGAFLLYSQK
KLSHSKSQVGYQELANGRKAATLQLLERWRALDESGRMKYLKKTSRCPDPCLALYRPDIC
FGSVSETFDSIVESYLDQVKVKQEFQTSEVLDSDRLRQLLQLKWQRALCDPGEAVGLLAA
QSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSNIKTPMMSIPVLMTKKALK
HVKILRKKITRVCLSEVLHKVDVIETFRNVEKNRKQSEKSRVYKITFHFLPPERYQQDKL
LTPSKILHFMEQKFFRMLLEVIKKMHTKLAAMGIVDTRRAAASDTDREDGGVEGSAEVDG
NEDAGNDNIVDDEANEGDADATDSSRKKKQEEEVDYEGEEGEEGSDQEQEDVAENEQKDA
GDAQETAEEESGESPNSTEQPQETSQESMRINTVLQLSTAMEEYKYDTVNGLWCELTLAL
PITKVHFDLTSVVVKQAQNSVVMETKGITRCLLNEVTTKEGTKEMVLNTEGINMHEMFKH
ADILDLNRLYSNEVHAMANTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFE
GVYKPLNRIAFQSNSSPLQQMTFETSFKFLKQATMLGSYDKLCSPSACLVVGKVVKGGTG
IFELKQPLQ
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttctaaagaaacaccatggaggcgattagagggcatgtcgtttggcatgtac
tccgcggaggaattaaggaagctgagtgtgaagactatcactaactcactgctgctggat
aatgtgggcagtgccgctccgaacgggctgtatgacctggcgctgggtcctgctgataac
aaagagatctgctccacctgcatgcaggacttcgacggctgtccgggacacttcggcatc
atagagctgccgctgcccgtctacaaccctctgttctttgataaattatttttgctcatc
cggggctcatgcctgacgtgtcacatgctgaagtgtcctagagtggctatccatttgctg
ctgggccagctgaagctcctggacgtgggtgcgttgcaggaggtgtacgagctggagaat
gtgctcagtcagttcctgaatgtcaacgctcagccgaccacattagaattgcgagaattt
ctggatcggtttgttaatcccatactcgaagccaatgaagacaagaagcacatggctcct
gtcaaacacatctgtgagaaaaggtccagtctcattaacaatttctggaaaatccacatg
ggcttacggaaatgtatgaactgcaaaaccgggagagatatcgttcgcaaagaacacaac
agcaaaatcattgtctttaaatcgatgataaaaggctcagagcagaccgatgatacaaag
ctgaccgagcgtggattcttgactccaagtttggcgcgagagcatatcctcagactctgg
gagatagaaggtttcttcctgaatcatctgttaagttcggagaaaggcttcaatcctgaa
ctgttcttcttggatttgctggtggttcctccatgcaagtacaggcctattaatcgtttg
ggagaccagatgttcaccaacggacagactgtgaacatgcagtccgtgttaaaggataat
ttctccattcagaaattgcttgcattaatcgctgctgagaagatcaacaatactgaagac
acacagacaaagatggatgagtctagcgaagccgtcgagagcagtgcgatggatcaatcc
ttcataatgggcatcccgggactgactctcacagacaagctgtacaacatctggatccgc
ctgcagagtcacgtcaacatcgtgtttgacagcgacatggacaaactgataactgagaag
tttccaggcgttcgtcagctcttggagaagaaagacggcttgttcaggaaacacatgatg
ggaaagcgtgtggattatgccgcacgctctgtcatttgtcctgatatgtacatcggaact
aatgagattggaataccaatggtttttgctaccaagttgacgtacccgcagccggtgaca
ccctggaacgtgaaggaactcaggcaggcggtgctgaacggacccctcgtccaccctgga
gcctctatggtcattaatgaagatgggactcgcaccattctcagcaaaaacctgacccag
agagaagctgtggccaaacagctgctgacccccaccaccggccagcacaagatacccatg
aagattgtgaatcggcacatcaagaatggggatgtgctgctgttaaaccgtcagcccact
ctgcacagaccatcgattcaggcccactgcgctcggatcctgcccggagagaaagtgctc
cgcttacattacgctaactgtaaggcctacaacgctgactttgatggagacgagatgaac
gctcacttccctcagagtgagctgggccgagccgaggcctacacgctagtgagcacagac
cagcagtacctagtgcccaaagatgggaagccgctggccggcctgattcaggaccacatg
gtgtctggcaccagcatgaccatccgcggctgttttttcacgtgggatcagtacactgcg
ctcatctacagaggcctgacagacaagatgggcagagtgaagctcctccgtcccgcgctc
cttaaaccggtgccgctctggacaggaaagcaggtggtgtcaacccttttgctgaatgtc
atcccagaaaactgtatccctttaaacttgacgggaagagcgaagattcctagtaaagca
tgggtgaaggagcctcccagatctgctccaggatacaagccggagaccatgtgtgaatct
caggtggtcattcgtcagggagagcttctggtgggcgttctggataaagctcactatggc
agctcagcgtacggtctggtgcactgctgctacgagctctacggaggagagaccagcgga
aaactgctcagctgtctggctcgactcttcactgcctacctgcagctttaccgtggcttc
accttgggtgtggaggacattcttgtacaagatggagccaacaaacaaagaaggaaaatt
atccaaaagtcagtcacatgtggctccaaggctcttcaggctgcgtttaacctgcccgcg
tccgctggagatgctgaagccagagaacgctggcaggacgcacatctgaattcagaccag
agagatttcaacatggtggacctgaagttcaaagaggaggtcaatcaagtgaacaacaac
atcaacaaggtttgcatgccacttggtctccatcgctccttcccagaaaacaacctacag
ctgatggtgcagtccggagccaagggatctactgttaacactatgcagatctcctgttta
ttgggtcagattgagctggagggccgccgaccaccgctgatgccttctgggaagtccctg
ccctgctttcagccctacgaaccacagccgcgctccggaggattcgtgactggcagattc
ttgacagggatcaaacctcctgagttctttttccattgcatggctggtcgtgaaggtctt
gtggacactgctgtcaaaaccagtcgatctggttatctgcagaggtgtgtgatcaagcat
ctagaaggtcttgtggtccagtatgatctgactgtgcgggacagtgatggaagtgtggtc
cagtttctttacggagaagatgggttagacatccccaagacccagttcctacagctgcgg
cagttccctttcatcaaagataactacgaggttatcagaaagtctaagtgcttggatgaa
gtcctggctaaaatggactcacaggctgcgtttaatcactttaaagccattaggagatgg
aaagccaagcatgagcgtgtttcacccagagacggtgccttcctgctctactcgcagaag
aaactgagccactcgaagtctcaagtagggtaccaggagctggccaatgggagaaaggca
gccactctacagttgttggagaggtggagagctctggatgagtctggccgtatgaagtat
ttgaagaagacgtctcgttgtccggacccgtgtctggctctttaccggccggacatctgc
ttcgggtcagtgtctgagacgttcgactccattgttgagtcctacctggatcaggtcaaa
gtcaagcaggaatttcagacatctgaagtccttgactcagatagattgaggcaactcctg
cagctgaaatggcagcgagctctgtgtgaccccggagaggccgtgggtctgctggcggct
cagagcatcggagagccctccacccaaatgacccttaacaccttccacttcgctggcaga
ggagagatgaacgtcaccctgggaattcctagattaagagaaatactcatgattgcgagt
tcgaacatcaaaacccccatgatgagcattccagttctgatgaccaagaaagccttgaag
cacgtcaagatactgcggaagaagataacacgcgtgtgtttatcagaggtgcttcacaag
gtggatgtgatagaaacgttccgcaacgtagaaaaaaaccgaaaacaaagcgagaaatca
cgagtctacaaaatcacgttccacttcctgcctcctgagcgataccagcaagacaagcta
ctcacccccagcaagatccttcatttcatggagcagaaattctttcgcatgctgttggag
gtcattaagaagatgcacactaaactggcagctatgggaatagtggacacgcgcagagcc
gcggcgagcgacactgatcgagaggacggtggtgtcgaggggtcggcagaggttgatggc
aatgaggatgcaggaaacgacaatattgtggatgacgaggcgaatgaaggcgatgctgat
gctacagattccagtagaaaaaaaaaacaagaagaggaggtggactacgagggcgaggag
ggtgaggagggcagcgatcaggaacaggaggacgtggccgagaatgaacagaaagatgca
ggagatgctcaggagacggctgaagaagagtctggtgagagtcccaacagcactgaacag
ccgcaggaaacttcacaggaatcaatgaggatcaacactgtgcttcagttaagcaccgct
atggaggagtacaaatatgacaccgtaaatgggctgtggtgtgagctgaccctggccctg
cccatcactaaagtgcactttgacctcacgtcagtggtggtgaagcaggctcagaactcc
gtcgtcatggagaccaaaggaatcacacgctgcttgttaaacgaagtcaccacaaaggag
ggtacaaaagagatggtgctcaacacagagggcatcaacatgcacgagatgttcaaacat
gctgatatcctggacttgaaccggttatactccaacgaggttcatgctatggccaacacg
tacggtattgaggtggccctgcgagtcattgagaaggagattaaagatgtgtttgccgtc
tatgggatcgaggtggacccacgccatctctctctcgtggccgactacatgtgctttgag
ggggtgtacaagcctctgaaccgaattgcctttcaatccaacagctccccgctgcaacag
atgacctttgagaccagtttcaagtttctgaagcaagccacgatgctgggttcttatgat
aaactctgttcgccctcggcttgcttggttgtaggaaaggttgtgaaaggaggaaccggc
atcttcgaactgaaacagccgttacagtga
DBGET
integrated database retrieval system
