Ctenopharyngodon idella (grass carp): 127509685
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Entry
127509685 CDS
T08802
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cide01001
]
127509685
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cide04054
]
127509685
Enzymes [BR:
cide01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
127509685
Protein kinases [BR:
cide01001
]
Serine/threonine kinases: Other
TAF1 family
127509685
Pattern recognition receptors [BR:
cide04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
127509685
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
AAA_25
Pox_A32
nSTAND3
Motif
Other DBs
NCBI-GeneID:
127509685
NCBI-ProteinID:
XP_051744548
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All DBs
Position
3:complement(26402771..26421597)
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AA seq
1162 aa
AA seq
DB search
MRVSVSCCPVMVPFEHVLLQVRKALQVSPGLLHDFLRELHEANVFSTQYYQSLYKDGEAE
EQLFFEVICNDGEDLARRLALPIWQNWDISQSILDSALKKQEELVPSDAEFQDIVSDPMS
ELLPDNVFSKYLESILEETEEAIDPYFLDNLSFPIDTDTTCTQPDQALDQDNLTNKRSRK
RKVDTPSNKTRKDTDGKRNRKATACPESPSGGMTPTITSKGSFQLSSNTFQNILRIPFSP
PPLPSSGGSALQFSICPFTPPLIGTVVPTWPTYVLVSPQNVSPGTQILPLSPADGTVAPP
ELTVSVLPVGSSSDRACKSLPSVSVDTLSPTKEGNPQKNTDSPPSKTESKIRPEAPECVK
DYINHVKSCMRDVCCTMRGGMAIESQYVDVDVIQRKLLIKSGKNANKCLEKELVVLSDSE
RKKAKLDRSQLFHNGDSRPKQSVALLGKAGVGKTMFIQRLCLDWASGSLPQFQFVFLLNC
KVLDLTQSNYSLKGLLLDLSTSPCCEDSDSVFNHILSCPDEVLIIFDSFDHIKDFEGLLQ
CPAKSPTDTKYTIKQLFSGLFQKEILSGCTILIATRPKDVLNQVLRKIDSLLELCGFSPE
DIELYTSKYFGDASLQESALKKIKNQSYIFSLCSNPLLCWTTCFLLENQDSRSDDLPSTL
TDLYQRVTSKHLQLAMLGNRSLCKRKQPDIPQLCKMAWEGFKNHNTCVNSGSSTELLDCG
LKSGILVSYETSERQENHFADLFTQNLLSALHLVQSKQVNEKMVVANSIVQQKKRKVQGE
SQDMLQRFVVGLLFQKTPDRVSILDSSVNIKVKRKAVEAHLKSMKPNNLVPARLLELFHC
VYETNGDKFAKLLLKNLPDNLSFCGAQLCPSDVYVICHLLQHASAVKRTFSINLQDTCIP
ISGLKELVGLKCIKSFWAHTADTIGLWEDLHQSNDELNLKKAIEKFTLNPFKATQGYHIE
SLPDLVRIHREKKLPVSEFVSALDKGVPALLHLQRLEFELGVQNGPEVFPKLIEVLPSLH
SLQHLDLEKNQIGDSGAEKLSGVLNFLKCLKLLNLSQNFIGDAGVEKLAKGLASIPSLQT
LSLYGNAIADIGAEHLALALPEMKVLQDLDIKFNKFTDIGATKLSAALKNCTGMKSLELW
NDCIPYGVFEHLRLQDSRIRSL
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgagagtatctgtcagctgctgtccagtcatggttccctttgagcatgtgttgttacag
gtgagaaaagctttacaggttagccctggattactacacgattttctcagagagctgcac
gaggccaacgtcttctctacccagtattaccagtctctctataaggatggtgaagctgaa
gagcagctcttttttgaagtcatctgtaatgatggagaagatttggcgagaagactcgct
ttacctatctggcaaaactgggacatcagccaaagcatcctggattcagcactcaaaaaa
caggaggaattggtcccttctgatgctgaatttcaagatattgtctcagacccaatgtct
gaactcttacctgacaatgtcttctcaaaatatcttgagtccattctggaagaaactgaa
gaagctattgatccctacttccttgataacctcagttttccaattgacacagacacaact
tgcacacaacctgaccaagcactagaccaagacaatttgacaaacaaaaggtcaagaaag
cgaaaagttgatacaccttcaaacaaaacacgcaaagatactgatggcaaacgcaacaga
aaagcaacagcgtgcccagaaagcccctcaggtgggatgacacccaccattacatccaag
ggaagtttccagttgagttcaaacacattccagaatattttacgtattcctttcagtccc
cctcctctgccctctagtggtggttcagcactacagttcagcatctgcccttttacgccg
cctctgatcggcactgtggttccgacatggcccacatacgtgcttgtgtcgccccaaaat
gtgagtccaggcactcagatacttcctctttcacctgctgatggcacagttgcccctccg
gagctcacagtttcagtactcccagtcggctcatcctcagaccgtgcatgcaagagttta
ccatcagtatctgtagacacactctcccctacaaaagaaggaaacccacaaaagaacact
gattccccaccttccaaaactgaaagtaaaatccgtccagaagcaccagaatgtgttaaa
gactacataaatcacgtaaagtcctgcatgagagatgtctgctgcactatgcgtggggga
atggcaatagaatcacaatatgtggatgtggatgttatccagaggaaactcctcatcaaa
tctggcaagaatgcaaacaagtgtttggaaaaagaactggtagtcctcagtgattcagag
cgaaagaaagcaaagctggacagaagtcagttgtttcataacggtgattcaagaccaaaa
caatctgtcgctctcctcggaaaagccggagtgggaaaaaccatgttcattcagcgttta
tgcttggactgggcgagtggcagcctgcctcaatttcagtttgtttttttgctgaactgt
aaagttttagacctcacacaatcaaactacagcttgaaagggttactgttggatttgtct
acgtctccttgctgtgaggactcagactctgtgttcaatcacattctgtcctgtcctgat
gaagttctcattatctttgacagctttgatcacataaaagactttgaagggcttcttcag
tgccctgctaaatcacccaccgacactaaatacaccatcaagcagctgttttcgggtttg
ttccaaaaagaaatcctctcgggctgcacaatactcatcgccacaaggcctaaagatgtt
ttaaatcaggtgctacgaaaaatcgacagccttttggagctatgtggcttctctcctgaa
gacattgagttgtatacatcaaaatattttggggatgcttccctccaagagagtgcacta
aaaaagattaagaatcaaagctacatattcagtttatgctccaaccccctactttgttgg
actacctgcttcctgctcgagaaccaagacagccggagtgatgatttgccttcaaccctc
acagacttgtaccaaagagtgacctccaagcatctgcaattggctatgcttggaaaccgc
tctttatgtaagaggaaacagccagacatcccacaactgtgcaaaatggcatgggaggga
tttaagaatcacaatacatgtgtaaactctggcagttcaacagagctgctggactgcggt
cttaaaagtggcatacttgtatcctacgaaacatctgagcggcaagaaaaccactttgca
gacctcttcactcagaacctcctgagcgctttgcacttggtgcaatccaaacaggtgaat
gaaaaaatggtggtggcaaacagcatagtccagcagaagaaacgaaaggttcagggagag
tcgcaggacatgctgcagaggttcgtcgtgggattgctcttccagaagacacctgataga
gtcagcatcctggacagcagtgtcaacataaaggttaaaagaaaggctgttgaagcccat
ctgaagagcatgaagcctaataatttggttcctgccaggttattagaactgtttcattgt
gtttatgagaccaatggagacaaatttgccaagctgctgttaaaaaacctgcctgacaat
ctgtcgttctgtggggcgcagctttgcccttcagacgtgtacgtcatatgccatctcctt
caacatgccagcgcagtgaagcggactttctccattaacctgcaagatacatgcattccc
atcagtggcctgaaagagcttgtgggactcaaatgtatcaagtcattctgggcacataca
gcagacaccattggcttatgggaggacttgcatcaaagcaatgatgaattgaatctgaaa
aaagccatagagaaattcaccttgaacccattcaaggcaactcaaggttatcacatagag
agcctacctgaccttgtccgaattcacagagagaagaagttaccagtgagtgaatttgtg
tctgcgctggataaaggtgtgccagccctcctgcatcttcagagactagaatttgagctt
ggagttcagaacggtccggaagttttccctaaactgatcgaggttctgccttctctgcat
tctctccagcatctggatcttgagaaaaaccaaataggagactctggagctgagaagcta
tcaggcgttttaaattttttgaaatgtctgaaattgctaaatctgtctcaaaacttcatt
ggagatgccggtgtggagaaactggctaaaggtctggcatccatcccttctctacagacc
ctcagtctctatggaaatgcgattgctgacattggagcagaacacctggctttggcttta
ccagaaatgaaagtcctgcaggacttggatattaagttcaacaagttcacagacattgga
gctacaaagctcagtgctgctctgaaaaactgcactggaatgaagtctttggagctgtgg
aatgactgcattccatatggagtttttgaacaccttcgtcttcaagattcaagaataaga
tccctttga
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