Ctenopharyngodon idella (grass carp): 127524784
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Entry
127524784 CDS
T08802
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
127524784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cide03400
]
127524784
DNA repair and recombination proteins [BR:
cide03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
127524784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
127524784
NCBI-ProteinID:
XP_051772630
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All DBs
Position
13:complement(27544121..27558142)
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AA seq
1371 aa
AA seq
DB search
MAKQSSLFNFFTKSPPLAVKAKSNPSPVEADAVSRSNTSPKEEAKVNSKKTPSKPVKSQA
KAGHAKLFGEKADTAKEREQSSMFSAGTLVWAKMEGHPWWPCMVVPQPLTGQQMRGRGRD
QRLHVHFFDEPPTRGWVNTKYIREYQGSDSTDAKSGGMFFSGKPVIRKAMELADAAMKQS
PEQRLKMSVCMDPSDEEEENDEDMEVEKSTISDVEMSEEEAEEKKKPSRRSSRAAAEKSQ
KSKRRRIVVASDSDDSGEEFKPDQAGGSSDEEEEEEEEVSSGAEEEESEPEPEPDSPVKP
VKRKRPLEKPAKSKSKPDTPKRAPATLPSVASNTKSRLSAFSAPDNFESQSSSANGTDGG
STVWDHEKLDWLQDGKRKDAQRKRQSDENYDPXTLYVPDDFLNRTTPGMRRWWQLKSEMF
DTVLFYKVGKFYELYHMDAVIGVNELGLTFMKGTWAHSGFPEIGFGRFSDVLVQKGYKXA
RVEQTETPEMMEARCKTLARPTKFDRVVKREVCRIITRGTQTYSVLDGAPSETQSKYLLS
IXEKSEEDSAGHGHIYGVCFIDTSVGRFHVGQFQDDRHCSRLRTXVAHYSPAQVLFEKGN
XSAETLKIFKALLSSTLQEGLNAGSQFWDAQKTLKVLAEEDYFKESKASTDDEKGSVLPP
TLKAMTSECDALSLTPKTGYELALSALGGCMFYLKKCLVDQELLSMGNFEEYVPVDVEME
QAGGASCFFAQTRQRMVLDGVTLANLEXLQNSSPGLEGTLLERLDTCCTPFGKRLLKQWL
CAPLCNPSSISDXLDALEDLMGAPSQATEVTDLLKKLPDLERLLSKIHSMGTPLKGQDHP
DSRAILYEEVVYSKRKIADFLAALEGFKVMKEIVSIMEPVAEGFRSKLMRQVVLLKTENE
DGXFPDLSPELKRWDTAFDHQKARTTGVITPKAGFDPEYDQALNGIKDCERGLQEYLDRQ
KKRLGCKNLSYWGTGRNRYQLEVPDSVSERSVPEEYEVRSTKKGWKRYSTKEIEQLFSEI
QSWEDKRDAALKDCMRRLFYNFDKNYKDWQTAVECMAVLDVLLSMSRYSQSGDGPMVRPE
MVLPGDGSQSPPFLDLRGSRHPCVTKTFFGDDFIPNDIFIACPSGEEEEGQDNGKALAPC
VLVTGPNMGGKSTLMRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGEST
FFVELSETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTHY
HSLVEDHVQDPAVRLGHMACMVENECEDPSQETITFLYKFIGGACPKSYGFNAARLANIP
EEVIQSGHKKAHEFERSTVSLRIFKKLCSFAEDSTADREQFTTLVQMIGSL
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagttccctttttaacttcttcaccaagtcgccgcctctggcagtgaag
gccaaatcaaacccttctccagtggaggcagatgcagtgagcagatccaacacctcacct
aaagaagaagccaaagtcaacagcaagaaaacaccatcaaaacctgtcaaatctcaagct
aaagctggacatgcgaaactgttcggagagaaagcagacactgcaaaggagagagaacag
tcatccatgtttagtgctggcactctggtatgggccaagatggaaggacatccctggtgg
ccctgtatggttgttcctcaacctctcaccggacagcagatgaggggccgtggccgagac
caaaggcttcacgttcactttttcgatgaaccgccaacccgtggttgggttaacacaaaa
tacataagagagtaccaaggctctgatagcacagatgccaaatccggaggcatgttcttc
agcggtaagcctgttatacgtaaagcaatggagctggcagatgctgcaatgaagcagagt
cctgagcagagactgaagatgtccgtgtgcatggatccctcagatgaagaagaggagaat
gatgaggatatggaggttgagaaatcaaccatatcggatgtggaaatgtctgaggaagag
gctgaagaaaagaagaagcccagccgacgttcatctcgtgctgcagctgaaaagagtcag
aagtcgaagcgtcggcgcattgtggtggcatctgacagcgatgactccggtgaggagttc
aaacctgatcaagcaggaggaagcagcgacgaggaagaggaggaggaggaggaagtgagt
agcggggctgaggaagaagaaagcgagccggagcccgaaccagacagccctgtgaaaccg
gtcaagcgcaaacgtcctttagagaagcctgctaaatcaaagagcaaaccagatacccca
aaacgagcacctgcaactcttccatccgtggcgtccaacactaagtctcgactctctgct
ttctccgccccggataacttcgaaagtcagagtagcagtgcaaatgggacagatggagga
tctactgtgtgggaccatgagaaactcgactggctgcaggacggcaagagaaaggacgca
cagcgtaaacgccaatctgacgaaaactacgaccccnngactctatacgttcctgatgat
ttcctgaacaggacgacgcctggaatgcgccgttggtggcagctgaagtctgagatgttc
gataccgttctgttctacaaagttggaaagttctacgagctctaccatatggacgcagtg
attggcgtcaacgaactcggccttaccttcatgaagggtacttgggcccattctggcttc
cccgagattggctttggacgcttctcagacgtacttgtgcaaaagggctacaaangtgct
cgtgtggaacagaccgagacccctgagatgatggaagcacgatgcaaaacattggcgcgt
cccaccaaatttgaccgcgtcgtcaagcgagaggtttgcagaatcatcacgcgagggaca
cagacgtacagcgtgcttgacggcgccccttctgaaactcaaagtaaatatctgttgagc
attnaagagaagagcgaggaggacagcgcaggccatggccacatctacggggtctgtttc
attgacacctcggtgggacgcttccatgtcggtcaattccaggatgaccgccactgttcc
cggttgcgtaccnctgtggcacactattctccagcccaggttcttttcgagaagggcaac
ncgtcagctgagacgttgaaaatctttaaggccctcttgtcatccactttacaagaaggc
ctcaatgctggttcacagttttgggatgcccagaagaccctaaaggtccttgctgaggaa
gactacttcaaagaaagcaaagcgtcaactgatgatgaaaagggatcagtgctgcctcca
actctcaaagctatgacgtccgaatgtgacgctctaagtctcactccaaagacgggttat
gaactcgctctttcggcccttggtggctgtatgttctacctaaagaaatgtctagtggac
caggagcttctttccatgggcaacttcgaggagtatgttcctgtcgacgtggagatggag
caggctggaggagcgtcttgtttctttgcccagacccgtcaaagaatggttttggatgga
gtgacccttgctaaccttgagnatcttcagaatagctcaccgggtcttgagggaacccta
cttgaacgattggacacgtgttgcactcccttcggcaaaaggttgttgaagcaatggctc
tgcgcccctctttgtaatccatcctccattagtgacngcttagatgctctggaggacctg
atgggcgctccgtcccaagcgaccgaagtcaccgacctactaaagaagcttccggatctc
gaaaggctacttagcaagattcacagcatgggtactcctttaaaaggacaggaccacccg
gactcacgagcaattctgtacgaggaggtcgtctacagcaaacgtaagatcgctgacttt
ctcgcagcacttgagggattcaaagttatgaaagaaatcgtgtcgatcatggagcccgtc
gctgaaggcttccgatcgaaactgatgcgccaagtggtgctcctcaagacagaaaacgaa
gatgggncttttcccgacctctcgccagagctcaaacgttgggacactgctttcgaccat
cagaaagctcgcaccacaggtgtcataactccaaaagctggctttgatccggaatacgac
caagccctaaacggaattaaagactgcgagagaggcctgcaggaatacctggacagacag
aagaagagattgggctgtaagaatctatcctactggggaacgggaaggaaccgctaccag
ctcgaagttccagatagtgtttccgagaggagcgtgccagaggagtacgaggtgaggtcc
actaagaagggctggaagcggtactctaccaaagagatcgagcagctgttttcagagata
cagagctgggaagacaaaagagatgcagcgctgaaggattgcatgagaagactcttctac
aatttcgacaagaattacaaagactggcagacagctgttgagtgcatggcagtacttgat
gtgctgttgagcatgtcccggtacagtcagagcggcgacgggcccatggtgagaccagag
atggttcttccgggtgacgggtctcagtcgccccccttcctggatctgagagggtcccgt
cacccttgtgtcaccaagaccttctttggtgatgacttcattcccaatgacatcttcatt
gcttgccctagcggtgaagaagaagagggtcaagataacggtaaagcacttgccccatgt
gtgttagtcaccgggccaaacatgggaggcaagtccaccctaatgagacagtgtggtctg
gtggtgatcttggcccagctgggctgttacgtgcctgctgagagtttgcgtctcactccc
gtggaccgagtgttcactcgtcttggcgcgtctgatcgtataatgtcaggtgaaagtacg
ttctttgtggagctcagcgagactgctagcatacttttgcacgccaccaaccactccctt
gtcctgcttgatgaactgggcagaggtacggccacgtatgacggcacagccattgcgagc
gcagtggtgaaggagctgtcggagaagatctgctgccgtaccctgttttccactcattac
cactctctggtggaggaccacgtccaggaccccgctgtgagactcggacacatggcctgt
atggtggagaatgaatgcgaggaccccagtcaggagaccatcactttcctctacaagttc
atcggtggcgcgtgtcccaaaagttatggcttcaacgcagcccgcttggcaaacatcccg
gaggaagtcatccagtccggacataagaaggcccatgagtttgagaggagcaccgtgtct
ctcaggatattcaagaaattgtgctcattcgctgaagactccaccgctgatcgtgagcag
ttcaccacactggttcagatgatcggcagcctgtga
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integrated database retrieval system
