Ctenopharyngodon idella (grass carp): 127525465
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Entry
127525465 CDS
T08802
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
127525465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127525465
Enzymes [BR:
cide01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
127525465
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
127525465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF1186
Motif
Other DBs
NCBI-GeneID:
127525465
NCBI-ProteinID:
XP_051773989
LinkDB
All DBs
Position
13:20087958..20101556
Genome browser
AA seq
1132 aa
AA seq
DB search
MDLSKWCNLKSEPSLKHLTEAGFGVPKNKQHVPVQELVKAHIDSFDQAVTDGLCRVVEGI
PPLEFMYKGDRVSLSFVEAIIQPPAIAKGGISRDVRVFPAECRGRRCTYKGKLVADVSWS
INGIPKGIIRQALGQLPIMVKSKLCNLHGLSPKELIEHHEEAEEMGGYFLVNGIEKVIRL
LIMPRRNYPITISRPKFKTRGPGYTQYGVTMHSVRDEHTAVNMNLHYLENGTVMVNFIYQ
KELFFLPLGFALKALVDYSDYQIFQELIKGREENSFFKSCVSEILRVVMDQGCTTKAKVL
RYLGERFRVKLNLPEWYTHEQCAHFLLDECLCIHLKSDVEKFYMLCMMTRKLFSFAKQEC
MEENPDSLMFHEVLTPGQIYLMFLKERMAGWLVSVKYALEKRSEKLGVLTADTLTKGFNM
ATDLTKAFEYMLATGNLQSKTGLGLLQNSGLCVVADKLNFIRYLSHFRCVHRGASFAKMR
TTSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTAHSEIVTQVHPTTTLPALLCSLGVTAV
DGTPSQPYSDCYPVILDGAMVGWVEKEVAPSVIESLRRFKVLGEKKVPPWTEIVLVPQTG
KASLYPGLYLFTTPCRMVRPVRNLGLGKQELIGTFEQVFLNVGIFEEELEEGVTTHQELF
PHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQDRSDNKLYRLQTPQSPLV
RPSMYDHYNIDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTDIIDLA
EKFKGEIDIVFGVKPGDPKVMDKLDADGLPFIGSMLKYGEPYYSYINLITGQSHVVFFKY
QESSIVDNIKVCSNDAGTGLFKRVCITTRIPRNPTIGDKFASRHGQKGILSRLWPAEDMP
FTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSASLHGLSHDATPFRFSEKNSALEHFG
KMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTN
QPVGGRNIQGGIRFGEMERDALLAHGSSFLLHDRLFNCSDRSVAQVCIDCGSLLSPLLEK
PPPNWSSIRHRKTICLLCNKSDSIETVSVPYVFKYFVAELAAMNIKIKLDVK
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atggatctctccaagtggtgtaatctaaagtccgaaccgagtttaaagcatttgacagag
gcagggttcggtgtcccgaaaaacaaacagcacgtgcccgtacaggagctggtgaaggcg
cacattgattcgtttgatcaggcagttactgatggattatgtcgggttgtggagggcatt
cctccgttggagttcatgtacaagggagacagagtcagtctgtcttttgtagaggccatc
attcaaccgccagcgattgctaaaggaggaatcagcagagatgtgcgggtgttccctgcc
gagtgcagaggcaggcgctgcacatacaaggggaagctagtggcggatgtgagctggtct
attaatggcattcccaaaggaatcatcagacaggctctgggacagctgccaatcatggtc
aaatcgaaactatgcaaccttcatggtctctcacccaaagaactcatcgagcatcacgaa
gaagctgaggaaatgggcggttattttctggtgaatggcatagagaaggtgattcgtctt
ctgatcatgccaaggaggaactatcccatcaccatatcaagaccaaagtttaagaccaga
ggaccaggctacactcaatacggtgttacaatgcattctgtaagggatgaacacacagcc
gttaatatgaatcttcactacctggaaaatggaacagtgatggtgaattttatataccag
aaagagctgttctttcttcccttgggctttgcactgaaggctctagtggattactcggac
taccagatcttccaggagctgattaaaggtcgagaggagaactctttctttaagagctgt
gtctcagaaattctgcgtgttgtcatggaccagggctgcaccactaaagccaaggtgctc
cgttacctgggcgagcgtttccgggtcaaactcaacctcccagagtggtacactcacgag
cagtgcgctcacttcctgttagatgaatgtctgtgtattcacctgaagtcagatgtggag
aagttctacatgttgtgtatgatgacacggaaactcttcagctttgccaagcaggagtgt
atggaggagaaccctgacagtctgatgttccatgaagttctcacaccaggccagatctac
ctcatgttcctgaaagagagaatggcaggctggctagtgtcggtgaaatatgccttggaa
aagagaagtgaaaaactgggagtgctgactgcagatactttgaccaaaggcttcaacatg
gctacagatctcactaaagccttcgagtatatgttagccacaggaaacctccagtccaag
acaggtctgggcttgctgcagaactccggactgtgtgtcgtagcagataagttgaacttc
atccgttacctgtctcatttccggtgcgtgcacagaggagccagcttcgctaagatgagg
accacatctgtgcggaagctgctgccagagtcttggggtttcctgtgtccggtacacact
cctgacggagaaccatgcggccttatgaaccacatgacagcccatagtgagattgtgaca
caggtgcatcccacaaccaccctgcctgccctgctgtgctctctaggagtgactgctgta
gacggtacccccagtcagccgtattcagactgttatcccgtcatactggacggggccatg
gttggctgggtggaaaaagaagtggcgccctcagtcatcgaatctcttcgcagatttaag
gtgctgggagagaaaaaagtgccgccctggactgagattgttctggttcctcagacgggt
aaagccagcttgtacccaggcctttatctgttcaccacaccctgtcgcatggtgcggccc
gtccggaaccttggcctgggcaaacaggagcttattggcacctttgaacaggtgttcctg
aatgtgggcatcttcgaggaagagttagaggagggagtgaccacacatcaagagctgttt
cctcacagcatgttgagcgtggtggcagaattcatccctttctctgatcacaaccagagc
cccagaaacatgtaccagtgccagatgagtaaacagaccatgggcttcccgctgcattca
taccaagaccgatccgacaataaactgtaccgtctgcagaccccccagagtcctctggtc
agaccctcgatgtacgaccactacaacatagacaattaccctattggcaccaacgcaata
gttgctgtcatttcttacactggctacgatatggaagatgctatgatcgtcaataagtcc
tcatgggagcgtggctttgctcatggttctgtttataagaccgacatcatagatctggct
gaaaagttcaaaggtgaaatcgacattgtgtttggggtgaagccaggtgaccccaaagta
atggacaaactggatgcagatggattgccatttatcggctccatgctgaagtatggagaa
ccttactacagctacatcaatctcattaccggccagagtcatgtggtctttttcaagtac
caggagagctccattgtggacaatatcaaggtgtgcagcaatgacgccggcactggcctt
ttcaagcgcgtttgcatcacaacccgcattcccaggaaccccaccatcggagacaagttt
gccagtagacacggtcagaaaggaatcctgagccgtctgtggcccgcggaggacatgccc
ttcaccgagagtggtatgagcccggacatcctgttcaaccctcatggcttcccctctaga
atgaccatcggaatgcttatcgagagcatggctggaaaatctgcgtccctccatggcctg
tctcacgacgccacacccttcaggttctctgagaaaaactctgcattggagcactttggc
aagatgctgaaagcagcaggatacaacttctacggaacggagaggctctactccggcatc
agtggcttggagctcgaggcagacatctttatcggggtggtttactaccagcgcttgcgt
cacatggtctccgacaagttccaggtgagaactacaggagcaagagatagagtgaccaat
cagccagtgggagggaggaacatccagggaggaatccggtttggagagatggaacgggat
gctttgctggctcacgggtcgtcgtttctacttcacgaccggctgtttaactgctctgac
cgctccgtggcacaagtttgcatagactgcggcagcctgctgtcgccgcttctggaaaag
ccgccgcctaattggtcatctatacgccatcggaaaaccatctgcttgttgtgcaataag
agcgactcaattgagactgtatccgttccttatgtgttcaaatacttcgtagcagagctt
gcagcaatgaacattaaaatcaaattagatgtcaagtaa
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