Carya illinoinensis (pecan): 122275088
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Entry
122275088 CDS
T08745
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122275088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122275088
Enzymes [BR:
cill01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122275088
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
122275088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF2635
Motif
Other DBs
NCBI-GeneID:
122275088
NCBI-ProteinID:
XP_042939965
LinkDB
All DBs
Position
9:complement(3523826..3553637)
Genome browser
AA seq
1708 aa
AA seq
DB search
MAQITEGTTEHVKAVRFSFFTDEEVREHSVVKVTNPILLDSMERPVPGGLYDPELGPLDE
RSLCKKCGQRSFHCPGHCGNIDLVSPAYNPLLFNILYNLLQRTCLFCHHFRASRSQVETC
ISQLKLIVEGDVVGAKRLDSDTPGETSYPNDGDWSQNHDAKYLRQQGWTSLQFMEAMSVL
KKFLRPRFVVCKNCGAKNPKISKPTFGWFHMSGMSGADARRNAIRGCKLGRSSTGGTNGK
SLPEVENTDDITNWGDVVDIVETDPSSVTSPRTQDSATRKQRKKAGEVLLDFVKQKDFFS
GPLLPSEVKEIVKLLWENESQLCSFISDIQHQGFKMKDNEPKTDYSMFFLETILVPPIKF
RPPSKGGDSVMEHPQTVLLGKVLQSNISLGNAHVNNLERSKIVSRWMDLQQSINMLFDSK
TATGQGQRNVASGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFA
LRLTYPERVTPWNVVKLRNAIINGSDIHPGATQYGDKLDTKQLPPSRKGRIAISRKLPSS
RGLLTQHGKSCDYEFEGKFVRRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH
YANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHVVSA
VLLTKKDTFFTGDEFNQLLYCAGISTARPVSFLGKFGQKVCMLNSEDEMQPLLPAIWKPV
PLWTGKQVISALLNHITKGHPPFTVEKDAKLPRDFFRSGNDEDELNKQEKVDKKGTKEGV
LDDKKLSKGKMVDGNASKKKEPDEDKLLIYKNDLVRGVIDKAQFGEYGLVHTVQELYGSN
TAGILLSALSRLFTAFLQVHGFTCGVDDLLLMKKKDDDRDKNLQDCEKVGEEVHRMFVSD
KGGDKIDLLQLKIEEKIRGNGEPALTDLDRKMISKLNEELSKNFFKELLSRGLLKPSGKN
CISLMTTSGAKGASVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDWAARAGGFII
DRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKICYDHTVRDADG
SIIQFCYGEDGVDVHQTSYIAKFEALAANKEMIFKKCGQELQKSNSYIKELPCALEEKAK
EFVRAFSLRQKNPNVLKEADFLKLMEHKYVLSLAQPGEPVGVLAAQSVGEPSTQMTLNTF
HLAGRGEMNVTLGIPRLQEILMTASSDIKTPVMTCPFQIGRSKEDASCLADKLKKITVAD
IIKNMKVSVIPFSVHDHQTCSIYKLEMMLHIPENYPKHTDITLEDWEGTLEVVFVRELED
AIQNHLLLLSKISGIENFTPDSESNASNGTEDDDVSGNKSHREEENDDDNDADDGGVSED
LGMDAQKRKQQATDEMDYGDSSEEEPDEGELSAGSESEIDRLEDEIEVSNDAVIGRVNVK
DVTSEPSELGKPSKHKLKDKRNQSETKRKKRARGKLVKKEYDRAFFVKTKGMHFEVHFRF
TNEPHILLAQIAQKTAKKVYIQSFGKIDGCKVVTCKEKQVIYYGKNPKDRKDISSAEKEK
VPALQTTGVDFSTLWQFQDVLDVRYVYSNNIHAMLTTYGVEAARETIIKEIQHVFGSYGI
SVNMRHLTLIADYMTHSGGYRPMNRLGGIAESTSPFSKMSFETASKFIVEAAYHGETDEL
ETPSARICLGLPVKMGTGCFDLMQKIEI
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcacagagggtacaacagagcatgttaaagcagttaggttcagtttcttt
acagatgaagaggttcgagagcatagcgttgtgaaggttacgaaccccattttgcttgat
agtatggagagacctgtacctggtggattgtatgatccagaattgggcccgctagatgaa
aggagtctctgcaagaaatgtgggcagcgttcattccattgcccaggtcactgtggaaat
attgatcttgtttcacccgcctacaatccattgctatttaatattctttacaatcttctc
cagagaacttgtttattttgtcaccatttccgggcaagcagaagccaggttgagacatgt
atttctcaattgaaactcattgtggaaggtgacgtcgttggggctaaaagattggattct
gacacaccaggtgaaacgtcatatcctaatgatggtgattggagccagaatcatgatgcc
aagtatttaaggcagcaaggttggacctctcttcagtttatggaagcaatgtctgttttg
aaaaagtttctgaggccaaggtttgtggtttgtaagaattgcggggccaaaaatcctaaa
atcagtaaacctacctttggatggtttcatatgagtggcatgtcaggtgctgatgctaga
cggaatgctattcgaggttgcaagctaggaaggtcatccactggtggaaccaatggaaaa
tctttgcctgaggtggaaaatacggatgatattactaactggggggatgttgttgatatt
gttgaaacagatccatccagtgtcacctctccaagaactcaagatagtgctacaagaaag
caaagaaaaaaagcaggggaagtgcttcttgattttgttaagcagaaggatttcttttca
ggacctctattaccatcagaagttaaagaaattgtgaagcttctatgggaaaatgagagt
caactctgttcatttatcagtgatattcagcatcagggatttaaaatgaaagataatgaa
ccaaaaactgattactctatgttcttcttagagactattcttgtacctccaatcaaattc
cggcccccatccaagggaggtgattctgtgatggagcatcctcaaactgttttgttgggt
aaggtgctacagtccaatatatcattgggaaatgctcatgttaacaacttagaacgctca
aaaatagtaagccggtggatggatctccaacaatctataaacatgttgtttgatagcaaa
actgccacaggtcaaggtcaaagaaatgtagcttcagggatttgtcaattgctggaaaag
aaagaaggcatgttccgccagaaaatgatgggaaagagggttaactttgcttgccgctct
gtcatatcgccagatccctatttagcagttaatgaaattggaattcctccttattttgca
ttaagattaacctatcctgagagggtgactccttggaatgttgtcaagttgaggaatgct
atcatcaatggttcggatattcatcctggagctacacaatatggcgataagctagatact
aagcaactaccaccaagtcgcaaggggcgcattgcaatatcaaggaaattgccatcgtcg
cgaggtctcctcacacagcatgggaaaagctgtgattatgaatttgaaggaaaatttgta
cgtcgccacttgcaagatggggatattgtgcttgttaacagacagcccactctacacaag
cccagtataatggcacatgtagttcgtgtgttaaagggggagaaaacacttcggatgcac
tatgcaaactgcagtacgtacaatgctgattttgatggagatgaaatgaatgttcacttc
ccacaagatgaaatttctcgtgcagaagcttacaatattgtaaatgccaataatcaatat
gtcaagcccacaagtggtgaacccattagagccttgattcaagatcatgtcgtaagtgct
gtgcttcttacaaagaaggatacattttttactggcgatgagttcaaccagcttctttat
tgtgctggcatctctactgctcgcccagtttcttttttaggaaaatttggccagaaagtt
tgcatgttgaactctgaagatgagatgcagcctcttctgccggcaatatggaaaccagtg
cctctttggactgggaaacaggtgattagcgccttgctaaatcatattaccaagggtcac
cctccatttactgttgaaaaagatgcaaaactcccacgtgatttttttaggagcgggaat
gatgaggatgaactgaataaacaagaaaaggttgataaaaaaggaacaaaggaaggggtg
ctggatgacaagaaacttagtaaagggaaaatggttgatggaaatgcatcaaagaaaaag
gagcctgatgaagataaactgttgatatataagaatgacttggtgcggggtgtgattgac
aaggctcagtttggtgaatatggattggttcatacggtgcaggagctctatggctcaaac
actgcagggatcctgctttctgcgttgagtcgtttatttactgcttttttgcaggtgcat
gggttcacctgtggagtagatgatcttttgctaatgaagaaaaaagatgatgacagggac
aaaaaccttcaagattgtgagaaagttggtgaagaagttcaccgtatgtttgttagtgat
aagggtggtgataaaatagatctcctgcagctgaaaattgaagaaaagatacgcggtaat
ggagaacctgcattgacagacttggacaggaagatgataagcaagctcaatgaagaatta
agtaagaacttcttcaaagagttgttgtccagagggttattgaaaccctctggaaagaac
tgtatttctctcatgactacatctggggctaagggtgcatcggttaatttccagcaaata
tcttctcatttaggacaacaagagttagaaggcaaacgagtccctcggatggtttctgga
aaaactttaccttgcttccctccttgggattgggcagctcgagctggaggctttattatt
gaccgctttcttactggtctccaccctcaagaatattactttcattgcatggctggtcgt
gaagggttggttgatacagcggtgaaaacatctcgcagtggatatctacaaagatgccta
ataaaaaatcttgagtgcctaaaaatttgctatgaccatactgttcgtgatgctgatggt
tccattattcaattttgctatggagaagatggtgtggatgtacatcaaacgagttatatt
gcaaaatttgaagcactggctgcaaataaagaaatgattttcaaaaagtgtggtcaagag
cttcagaagtccaatagttacatcaaggaattgccttgtgcccttgaagaaaaagcaaag
gaatttgtgcgtgcattctccttgagacaaaaaaatcctaatgttttgaaagaagcagat
ttcttgaagttaatggagcacaagtatgtcttaagccttgctcagcctggagaaccagtt
ggagtgcttgctgcacagtctgtaggagagccatcaacacagatgacgttgaatacattc
catcttgctgggcgaggtgaaatgaatgtgacacttggaattccacgcctacaggaaata
ttgatgactgcttcaagtgatattaagacccctgtgatgacatgccccttccaaattggg
aggtcaaaggaggatgcctcttgtcttgctgataagttgaagaagataactgtagcagac
ataataaagaatatgaaagtatctgtcattccattttctgttcatgatcaccagacctgc
agtatttataagcttgaaatgatgcttcacatacctgaaaactatccaaaacacactgat
attacattagaagactgggagggaaccctagaggttgtttttgtgagggagttggaggat
gccatacaaaatcatctgctcttgctttctaaaattagtggcattgaaaacttcacgcca
gattctgagtcaaatgcttcaaatgggacagaggatgatgatgtatctggaaataaatca
caccgcgaggaagaaaatgatgatgacaatgatgctgatgatggcggggtgtctgaggat
cttggtatggatgcacaaaagagaaaacagcaagcgacagatgaaatggattatggggac
tcttctgaagaggaaccggatgaaggggagctgtcagctggctctgaaagtgaaattgac
cggttagaggatgaaattgaagttagtaatgatgctgtgattgggagagtcaatgtcaaa
gatgtaacaagtgaaccatcagaacttggaaaaccctctaagcataagttgaaggataaa
agaaaccaatcagaaaccaaacgaaagaagagagccagaggaaaactcgtaaaaaaagag
tacgatagagcattttttgtgaaaaccaagggaatgcactttgaggtccattttcgattt
accaatgaacctcatattttactggctcagattgctcaaaaaacagccaagaaggtttac
atccagagctttggtaagattgatgggtgtaaagtagttacttgcaaagaaaaacaagtg
atatactatggtaaaaatcccaaagacaggaaggatatctcgtctgcagaaaaagaaaaa
gttccagcactgcaaaccacaggtgtggatttcagtactttgtggcagtttcaggatgtt
cttgatgtcaggtatgtatactccaacaacatccatgctatgctaaccacgtatggggtg
gaagccgccagagaaactatcatcaaggaaatacagcatgtttttggttcttatgggata
tctgtgaatatgcggcacctaaccctcattgccgactatatgacccattcgggtggatat
cgtccaatgaacagacttgggggaatagcggagtcaacatctcctttcagcaaaatgtct
tttgagacggcttcgaagttcattgttgaagctgcgtatcatggagagacagacgagttg
gagactccatctgctaggatctgtcttggattgccagtgaagatgggtactggatgtttt
gatttgatgcagaagatcgaaatctga
DBGET
integrated database retrieval system
