KEGG   Carya illinoinensis (pecan): 122277685
Entry
122277685         CDS       T08745                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03020  RNA polymerase
cill03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122277685
  09124 Replication and repair
   03420 Nucleotide excision repair
    122277685
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cill03021]
    122277685
   03400 DNA repair and recombination proteins [BR:cill03400]
    122277685
Transcription machinery [BR:cill03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     122277685
  RNA polymerase III system
   RNA polymerase III
     122277685
  RNA polymerase I system
   RNA polymerase I
     122277685
DNA repair and recombination proteins [BR:cill03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      122277685
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N DUF2405
Other DBs
NCBI-GeneID: 122277685
NCBI-ProteinID: XP_042943709
LinkDB
Position
9:complement(4703396..4707589)
AA seq 227 aa
MEEDGFEGEGNVVLGPCLTSYVDNGSSESHRYYLARRTVLEMLRDRGYAVPNSEIELSLQ
DFRAIHGQNPDLERLRISTTFRSDPLKRILVIFCGPGVVKVNVIRSIASQIVNKDTLSGL
ILIVQNHITSQAMKAVDLFPFKAEIFQITDLLVNITKHVLKPKHRILTDQEKRRLLKKYN
IEEKQLPRMLRKDAIARYYGLEKGQVVKVSYGGGEITESHVTYRCVW
NT seq 684 nt   +upstreamnt  +downstreamnt
atggaggaggatgggtttgaaggggaggggaatgtggtgctgggaccgtgcctgaccagc
tatgtggacaacggaagctctgagagccatagatactatctggcacgcagaactgtgctg
gagatgctcagggacagaggctatgccgtgcccaactctgaaatcgagctctctctacaa
gacttccgggccattcacggccaaaacccagaccttgagcgcctccgaatctccacgacg
tttcgctctgaccctttgaaaaggattttagtaattttttgtggacctggtgtagtaaaa
gttaatgtgatccgcagcattgcatcccaaattgtcaacaaagacactttaagtggattg
atattaatagtgcaaaaccatataacatcccaagccatgaaagcagtggatcttttccca
tttaaagctgaaatatttcagattactgatttgcttgtgaacattacaaagcatgtgtta
aagccaaagcatcggatactgactgaccaagagaaacggaggctcttgaaaaagtacaat
atagaagagaagcagcttcctcgaatgttacgaaaagatgcaattgcgagatactatgga
cttgagaaggggcaggtggtgaaagtgagctatggtggtggtgaaatcactgagtcgcat
gttacttaccgttgcgtttggtga

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