Carya illinoinensis (pecan): 122293183
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Entry
122293183 CDS
T08745
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1 isoform X1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122293183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122293183
Enzymes [BR:
cill01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122293183
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
122293183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
122293183
NCBI-ProteinID:
XP_042957604
LinkDB
All DBs
Position
14:11803176..11837707
Genome browser
AA seq
1399 aa
AA seq
DB search
MASAQADDIAFTKHPYIEDVGPRKIKSMKFSTFSESEISKLAEVQVYKGQYYDAKRNPIE
GGLLDPRMGPANKNCICATCHGSFGNCPGHFGYLKLALPVYNVGYMSTILDILKCICKSC
AHILLEEDLRKEYLKKMRSPKIEPLKKTELMKVIVKKCNNLTSGNKAVKCSRCGYVNVSV
KRAMSMPGILHERQKCNDGSVEEFRSAISHTKESKSPFNVATYILNPVQVLVLFKRMLDE
DCELLYLSDRPEKLMITNIAVPPIPIRPSVIMDGSQSNENDITERLKKIIQANASLSQEL
LEASSASKCLAGWDILQLEVAQYINSDVRVPFTMQVSKPLGGFVQRLKGKQGRFRGNLSG
KRVEYTGRTVISPDPNLKITEVAIPIQMARILTYPERVSHHNIEKLRQCVSNGPDKYPGA
RMLTHTDGSMRSLFPSVRRKLADALKYGEIVHRHLEDGDIVLFNRQPSLHRMSIMCHRAR
IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAVMLMGVQNNLCTPKNGEILV
ASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMMDGMDFVDLPTPAILKPIELWTGKQLFS
VLVRPHTNVRVYVNLTVKEKNYMKPKEEGEREMDAMCPNDGFVYFRNSELLSGQLGKATL
GNGNKDGLFSILLRDYKAHAAAACMNRLAKLSARWIGNHGFTIGIDDVQPSKYLNDRRQE
TISKGYQGCDEKIKLYNEGNLPPETGCDAAQTLEAGITRILNNIRDETGKVCMKELHWRN
SPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKAKTPAAKGFVA
NSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRKLIKALEDLSIQYDNTVRNASG
CIVQFRYGDDGMDPANMEAKSGSPLNFERLFMKAKATCPSGGTEYLSPSEVSERVESRFS
EIDMTPEGGCSVAFKKSFQSFLDDYGKSLEKTMDTFRSVENLAAKENSEIQEKIVKNISG
VTPKQLEVFLNTCISRYHLKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTL
GVPRIKEIMNGAKKISTPIITAALNCDDNVNAARMVRGRIEKTNLGQVAKSIKLVMTSRS
ASLVVKLDVERIRDVQLCIDANIVKESIIQTPKLKLKNEHIKVLDVGKLEILSPETDKSK
IHFHLHSLKNLLPMVIVKGIKTVERAIIKKEQNKKTKTIKYSLLVEGAGLQEVMGTEGVD
GCKTTSNHVIEVQQTLGIEAARKCIIEEIKYTMESHGMNIDIRHMMLLADLMTFRGEVLG
ITRFGIQKMDKSILMLASFEKTADHLFNASINGRDDRIEGVSESIIMGIPMQIGTGMLKV
RQRVDLPSELRYGPDPILS
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atggctagtgcgcaagccgatgacatagccttcactaagcatccctatatcgaggacgtg
gggcctcgcaaaataaaaagcatgaaattcagcacgttctccgagtccgagatcagcaaa
ctcgcggaggttcaagtatataaagggcaatactacgatgcaaaaagaaatcctatagaa
ggcggcttattggatccccgcatgggtccagcaaataagaattgtatatgtgcaacatgc
catgggagttttgggaattgtcctggtcactttggatacttaaaacttgctctccccgtt
tacaatgttggatatatgagtaccattttggacattttgaagtgcatttgtaagtcttgt
gctcatatacttctggaggaggacttgcgtaaagaatatttgaagaagatgagaagtcct
aagatagagcctctgaagaagactgagttgatgaaagtgatagttaaaaagtgtaataac
ttgacaagcggcaataaagcagtaaagtgctcaagatgcggatacgtaaatgtttcagtg
aagagggccatgtctatgcctggcattcttcatgagcgtcaaaaatgtaatgatgggagt
gtggaagaattcagatcagccatttctcacaccaaagagtcaaagtcgcccttcaacgtg
gctacttatattcttaaccctgtacaagttcttgttctttttaaaaggatgctggatgag
gattgcgagttgctttatctttctgatagaccggagaaactcatgataacaaatattgct
gtgcctcctatacctattcgtccttctgtcattatggatggatctcaaagcaatgaaaat
gacattactgagaggctaaagaaaattattcaggcaaatgctagccttagccaggagtta
ttagaagcaagctctgcatccaaatgcctggctggttgggatattcttcaacttgaggtt
gcgcaatacataaatagtgacgttcgtgttccattcacaatgcaagtttccaagccatta
ggtggtttcgttcagcgcctcaaggggaagcagggacgctttcgtgggaacttgtctggg
aagcgtgttgaatatactggcaggaccgtcatatcccctgaccctaacttgaaaattact
gaggttgcaattcccatccaaatggctcgaatcttaacttatcctgaacgtgtttcccat
cacaatatagagaaattgagacagtgtgtcagtaatggcccagataagtacccaggtgca
agaatgctcacacatactgatggttctatgaggtccctgtttcctagtgttaggaggaaa
cttgctgatgcactgaaatatggtgaaatagttcatcgtcatttggaagatggcgacatt
gttctttttaacagacaaccaagcttgcatcggatgtctatcatgtgtcatagggcaaga
atcatgccttggagaacattgagattcaatgaatcagtgtgcaacccatataatgctgat
tttgatggtgatgagatgaatatgcatgtaccacagactgaggaggctcgaacagaagct
gttatgctaatgggggtgcaaaacaatttatgcacaccaaaaaatggagagattttggtt
gcttccactcaagattttctaacgtcttcgtttctcattacaagaaaggacacattttat
gaccgtgcagccttttctcttatgtgttcttatatgatggatggcatggattttgttgat
ttgccaactcctgcaattctgaagccaatagagctttggactggtaagcaattatttagc
gttttagttcggccacatacaaatgtgagagtctatgtaaatcttactgtaaaggagaaa
aattacatgaagcctaaagaagaaggagaaagagaaatggatgctatgtgccctaatgat
gggtttgtttacttccgtaacagcgagctattatctggacaactagggaaagctacttta
ggaaatgggaataaggatggacttttctctattcttcttagggactataaagcacatgct
gctgctgcatgcatgaatcgtctagccaaattaagtgctcgatggataggtaatcacggg
ttcacaattgggattgatgatgtccaaccaagtaaatatttgaacgataggagacaggaa
acaatctctaaaggctatcaaggttgtgatgagaaaataaagttgtataatgaaggaaat
ctaccacctgaaactggttgtgatgctgcccaaacactagaggctgggataactagaata
ttaaataatattcgagacgagactggcaaggtctgcatgaaagagttacattggcgaaat
agtccattgattatgtcccagtgtggttccaaaggatctccgatcaatattagccaaatg
attgcttgtgttggtcagcagtcagttggcggtcgtcgtgctcctaatgggttcatagat
cggagtcttcctcacttccctagaaaagcgaaaacccctgcagccaaagggtttgttgct
aattctttctacagtggtttgactgccactgagtttttcttccatacaatgggagggcga
gaaggccttgtggatacggcggtaaaaacagctgacactggctatatgtcacgaaaattg
ataaaagcactagaggacctatccatccaatatgataacacagtacggaatgcgagtgga
tgtatagttcaatttcgttatggggatgatggcatggatcctgcaaatatggaagcaaaa
agtggatctcctttaaattttgaacgattgtttatgaaggccaaggccacatgtccttct
ggaggaactgaatacctatctccatctgaagtgtctgaaagagtagaaagcagattttca
gaaattgatatgacccctgagggtggttgctccgtggcttttaaaaaatcattccagagc
ttcttagatgattatggaaaatccttggaaaaaacaatggacacatttagatcagttgaa
aatcttgctgcaaaggaaaattcagaaattcaggaaaaaattgtcaaaaatatatctggc
gttactcctaaacagctagaggttttcttgaacacctgtatctctcgttatcatctgaaa
aaaatagaagctggaactgcgattggagcgattggagctcaaagtattggagagcctggg
acacagatgacactcaaaacctttcactttgctggagttgctagcatgaatgttaccctt
ggagttcctcgtatcaaagaaataatgaatggggccaaaaaaatcagtacgcccatcatc
actgcagctctcaactgtgatgataacgtgaatgctgcacggatggtacgaggtcgcatt
gagaaaacaaatttgggacaggttgctaaaagtataaagctggtaatgacttcgagatca
gcatcactagttgtcaagcttgacgtggaaagaattcgagatgttcaattatgtatagat
gctaatattgtgaaagaatcaattatacaaactccaaaactcaaactgaagaacgagcat
atcaaggttttggatgttgggaagttggaaattctttctccagaaactgataaaagtaaa
attcattttcatctccactctctcaaaaatttgcttccaatggttatagtgaagggtata
aaaactgtggaacgtgccatcattaagaaagaacaaaataaaaaaacgaagaccatcaag
tacagtttgctggtagaaggagcgggtcttcaagaagttatgggtacggaaggagttgat
ggatgcaaaacaacaagtaatcatgttattgaagtgcagcagacacttggcattgaagct
gccaggaagtgcatcattgaggagataaaatatacaatggaaagccatggaatgaacata
gacattagacatatgatgctcttggcagatttgatgacattcaggggtgaagtgcttgga
atcacaagatttgggattcaaaaaatggacaaaagtatattgatgctggcttcatttgag
aagacggcagatcatcttttcaacgcttccataaatggtagggatgacaggattgaagga
gtaagtgaatccataatcatgggtataccgatgcagataggcactggaatgctcaaagtt
agacaaagagttgatctaccttcagagctacgttatgggccagatccaattctatcttga
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