Carya illinoinensis (pecan): 122302489
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Entry
122302489 CDS
T08745
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122302489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122302489
Enzymes [BR:
cill01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
122302489
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122302489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
SRPRB
AAA_22
FtsK_SpoIIIE
ATP_bind_1
AAA_29
Motif
Other DBs
NCBI-GeneID:
122302489
NCBI-ProteinID:
XP_042969710
LinkDB
All DBs
Position
3:complement(2948236..2953112)
Genome browser
AA seq
510 aa
AA seq
DB search
MELPFVTGARAVNPKPSESLTDSSIIVAIRVGNEIHIDHTRVFCSPQGSTSRNLYVKPEN
PNTVGKGVMAFSAATMGAPLTTVSASASNVRQVKLDRESELRIEVPNDTSLRLRLLTGTA
EIFGTELPPEIWLNFPPRLKFAVFTWYGATVEMDGTTELDYTADETPMVSYVNVHAILEG
RRNRAKASSSNDSDSSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGS
ITIPGCIAATPIELPIDPVEGVPLDMPLVYFFGHATPSNNVDLYKVLVKELARMLERQFS
GNAESRAAGMVINTMGWIEGIGYELLLHAIDTFNANVVLVLGQEKLWSMLRDVLKNKPNI
DVVKLQKSGGVVSRNAKVRQKSRSCRIKEYFYGLVNDLSPHSNIANFNDLAVYRIGGGPQ
APRSALPIGAEPVADPTRLVPVSINQDLLHVVLAVSFAKEPDEIISSNVAGFIYITDVDI
QRKKITYLAPSAGELPSKYLIVGSLTWLET
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggagttaccgtttgtgactggggcaagggcagtaaaccctaaaccctcagaatcgctt
accgattcctcgattattgtagcgatacgcgtcggtaatgaaatccacatcgatcacacc
cgagtcttttgctctccccaaggctccacttcccggaacctgtacgtaaagccagaaaat
ccaaacacagtaggaaaaggagtcatggcgtttagtgccgcaaccatgggggcgccattg
actaccgtttcagcatcggcgtcgaatgttaggcaggtgaaattggacagagagagtgag
ctgaggattgaggtccctaacgacacatctctcaggctccgacttctcactggcacggct
gagatcttcggcaccgagctccccccggaaatatggcttaacttccctcccaggctcaaa
ttcgctgtttttacttggtatggagccacagttgaaatggatggcactacagaacttgat
tatactgcagatgagacgcccatggttagttatgtaaatgttcatgccatactggaagga
cgaagaaaccgtgcgaaagcatcatcatccaatgactctgattcctctcagggacccagg
gtgattgttgtgggacccacagattctggcaagagtaccttgtcaaggatgcttcttagt
tgggctgctaaacagggctggaaacctacttttgtggatttggatattggccaaggctca
ataacaattcctggatgcattgctgccaccccaattgaactacctattgatccagtggaa
ggagttcctcttgatatgccccttgtgtacttctttgggcacgcaactcctagtaacaat
gtagatttgtacaaagttcttgtgaaggagcttgctagaatgctggagagacagttttct
ggcaatgctgaatctcgtgctgcaggcatggtgatcaataccatgggatggatagaagga
ataggctatgagttgctactacatgcgattgatacattcaatgccaatgtggtcttggtc
ttgggccaggaaaaactttggagtatgctccgagatgtcctaaagaacaagcctaatata
gatgttgttaaacttcaaaagtcaggcggtgttgtatccaggaatgccaaagttcgccag
aagtccaggagttgtaggataaaggaatatttttatggcctggtgaatgatctctccccg
cattctaatattgcaaacttcaacgatttggccgtgtatcgaattgggggtggaccacag
gccccgcgctcagcactgccaataggggcagagcctgttgcagacccgaccagattagtt
cctgttagtatcaaccaggacttgctccatgtagttcttgctgtttcgtttgccaaagaa
cctgatgaaataatttcaagtaatgttgctggctttatctatatcacggacgtcgacatt
caaaggaagaaaatcacatacctcgcaccatcggcaggagagctcccaagcaaatatttg
atagtgggaagcttgacatggcttgaaacttga
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