Carya illinoinensis (pecan): 122313149
Help
Entry
122313149 CDS
T08745
Name
(RefSeq) DNA-directed RNA polymerase I subunit 2 isoform X1
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122313149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122313149
Enzymes [BR:
cill01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122313149
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
122313149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
DUF3677
Motif
Other DBs
NCBI-GeneID:
122313149
NCBI-ProteinID:
XP_042983837
LinkDB
All DBs
Position
6:13081816..13124554
Genome browser
AA seq
1174 aa
AA seq
DB search
MVVKPNTTPDLEALRELFRHHIESFDYMSDKGLEILFQSIRGIHVHDSFTNKNLRIWVEN
PKLHRPAKELLSKTMHGDLLPYKCRQAKISYTGSLKADVCFQWDGGAPIAQEFDFGQFPI
MLKSKLCHLRDADPQKLVSKKEESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFS
DRREGYTDKAVAIRCERKNQSSVTVKVYYLRNGSARLGFWIQGREYLLPAGVVLKALVDT
TDHEIYESLTCCCSEGDEREKGAVATQLVGERAKIILDEVRNLSLFTRLQCLEHIGEHFQ
AAMDGLENESYSGVANAVLEEYIFVHLDNNYEKFNLLIFMLHKLFSLVDQTSVPDNPDSL
QNQEVLLPGHLITIYLKEKLEDWLRRAKKLLQDEINNKSKNFDFCNLAHVKKVLDKNPAK
QISSAVENMLKTGRLVTKTGLDLQQRAGFTVQAERLNFLRFLSHFRAVHRGASFAGLRTT
TVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSNCRVTSYFGSEGDVRDFKKIRRDIRSFL
IGAGMMSLQPMLVKVGPPKFLSVHIDGHVVGSIASSLVENVVANLRKLKVSADTMIPDDL
EVGYVPLSLGGAYPGLYLFTSPARFVRPVRNILSPEKSQNIELVGPFEQVFMEIRCPDGK
DGGRQNAFPATHEEIHPTGMLSVVANLTPWSEHNQSPRNMYQCQMAKQTMAFSSQAIHFR
ADQKLYHLQTPQTPIVRTSTYTRYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVER
GLCHGQIYQTETLDLSDQSSRSERSQRMFRRSNVDKSMHSSIDSDGLPYVGQMIRPNEPY
CCIYDEVTSSTKTNKRKGSEPVIVDYVAVDVKNKKPLQKVNIRFRHPRNPVIGDKFSSRH
GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLKGKFLD
ATPFSSSVKKEDGETGQKPGSLVDELGEMLKEKGFNYHGLEVLYSGVYGTELTCEIFIGP
VYYQRLRHMVSDKFQVRSTGTVDQITRQPIKGRKFGGGIRFGEMERDSLLAHGAAYLLHD
RLHTCSDYHIADVCSLCGSILTTSFVQQQKRAVREIGGLPPARAPKKVTCHACQTSKGME
TVAMPYVFRYLAAELAAMNIKMTLQISNSAELSN
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atggtagtcaagccgaatacgacgccggatctggaggctctgcgcgagctcttcagacac
cacatagagtcgttcgattacatgtctgacaaaggactggaaatactattccagagcatc
agaggcattcatgttcacgattctttcaccaacaagaacctcagaatctgggttgaaaac
cctaagttgcaccgtccggcaaaggagctgttatcgaaaacgatgcacggagacctgctt
ccttacaaatgtaggcaggctaagatttcgtacacggggagtttgaaggcggatgtgtgc
tttcagtgggacggtggagctcctattgcacaagaattcgattttgggcaatttcccata
atgctgaagtcaaagctttgtcatttgagagatgctgatccacaaaaactagtttccaaa
aaagaagagtcatcggaaatgggtggttactttatactgaatgggcttgagcgagttgtt
cgacttctaatattgccaaagcggaattatccaatgagtatggtgcggaattcatttagt
gatcggcgagaaggatataccgataaagctgttgccataaggtgtgagagaaaaaatcag
tcttcagttacagtcaaagtatattaccttcgtaatggaagtgcgagacttggattttgg
atacaggggagggagtacttgcttcctgcaggcgttgtgctaaaggctcttgtagacaca
actgatcatgaaatatatgagagtttgacatgctgctgtagtgagggagatgagagagag
aagggtgctgttgccactcagctcgtgggtgaaagggcaaaaattattcttgatgaagtt
cgaaatctctctcttttcactcggcttcaatgtctagagcatattggtgagcatttccaa
gcagccatggatgggctggaaaacgaaagttattctggtgttgctaatgctgttcttgag
gagtacatctttgttcacctcgataacaattatgagaagtttaatctgctcatctttatg
ctgcataaacttttctcacttgtggatcagacatctgtgccagacaatccagattccttg
caaaatcaggaagtcttactccctggtcacttgattaccatttatctcaaggaaaaacta
gaagattggctgcgcagggcaaaaaagcttcttcaagatgagatcaacaataagagcaaa
aattttgatttctgcaacttagctcacgtcaagaaggttttggataaaaatcctgccaag
caaattagttctgctgttgaaaacatgttaaaaactggaagactggttactaaaacaggt
ctagatttgcagcagagggcaggctttacggttcaggcggagaggcttaatttcttacgt
tttctctcacattttcgtgctgtccatcgaggggcttcatttgctggacttcggaccaca
actgtgcggaaattgttacctgaatcttggggttttctttgccctgtgcatacacctgat
ggggagccatgtggcttgttgaatcatatgaccagcaattgtcgagttacatcatacttt
ggttctgaaggagatgtaagagattttaagaaaataagaagggatattcgcagctttttg
attggtgctggaatgatgtcgctgcagccaatgctagttaaagttggtcctcccaagttt
ctttcggtccatatagatggtcatgttgttggttctatagcttccagtttagttgaaaat
gttgtggccaacttacggaaattaaaagtgtcagccgatacaatgattccggatgatctg
gaagtgggatatgttcctttgagtctggggggagcatatcctggtttgtacctcttcaca
tctcctgctagatttgttcggccagttagaaatattttgagtcccgagaaaagtcagaac
atcgaactcgttggtccttttgaacaggtatttatggaaataagatgtcctgatggaaaa
gatggtgggagacaaaatgcttttcctgcaactcatgaagaaatccatccaactggaatg
ctcagtgtggttgctaatcttacaccttggtcagaacataatcagagcccacgcaatatg
taccagtgtcaaatggcaaaacaaacaatggctttctcttcacaagcaattcactttcgt
gcggaccaaaagctataccatcttcagactcctcaaactcctattgtgcgcacaagtaca
tatacgagatacggcattgatgaatatccaacaggcacaaatgcaatagttgcagtgcta
gcatatacaggatatgacatggaggatgccatgattcttaataaatcatctgtggagcgt
ggattgtgtcatggacagatataccagacggaaactcttgacttgtctgatcagagcagc
aggtcagaacgttcccagagaatgtttagaagaagcaacgtggacaaatcaatgcattct
tcgattgattctgacgggcttccatatgttggtcagatgatacgaccaaatgaaccctat
tgttgcatttatgatgaggtaactagttctacaaaaaccaacaagcggaagggttcagaa
cctgttatagttgactatgttgctgttgatgtgaaaaacaagaagccgcttcagaaggtg
aatatacgttttcgacatcctagaaaccctgtcattggggacaaatttagcagtagacat
ggtcagaaaggtgtttgctcacaattgtggccagacatcgatatgccattttctggtgta
accgggatgcgtccagatctgattattaacccgcatgcatttccatcaaggatgacaatt
gcaatgcttttggagtctgttgctgctaagggaggtagcttgaaaggaaaatttttagat
gcaacaccattttctagttcagtcaaaaaagaagatggggagactggacaaaagcctggt
tcccttgttgatgagcttggtgaaatgttaaaagagaaagggttcaattaccatggattg
gaggtattgtacagtggggtttatggaacagaacttacatgtgagatatttattgggcct
gtttattatcagagactccgacacatggtttcagacaaatttcaggtccgttctactgga
actgtcgaccagatcacccggcagcctattaaaggacgaaagtttggtgggggtattcgc
tttggagaaatggaacgagactctttgcttgcacatggggcagcatatttgttgcatgat
aggctccatacttgttctgattatcacattgctgacgtttgttctctatgtggaagcatc
ctcacaacttcattcgtccagcaacaaaagagagcagtgcgggagattggcgggctaccc
cctgctagggcacccaagaaggtcacttgtcatgcttgtcagacgagtaaaggaatggag
acagttgcaatgccctatgtcttccgatatttggctgcagagttggcagctatgaacata
aaaatgaccctccagataagcaatagtgccgaactgtcaaattaa
DBGET
integrated database retrieval system
