Carya illinoinensis (pecan): 122319096
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Entry
122319096 CDS
T08745
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cill03016
]
122319096
Enzymes [BR:
cill01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
122319096
Transfer RNA biogenesis [BR:
cill03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
122319096
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
122319096
NCBI-ProteinID:
XP_042992928
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Position
8:454605..463210
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AA seq
619 aa
AA seq
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MDDIEDLVVGAGAPPGFRLPLSSVGVNLKKKRNDKFYQTQDSPSPKIPGTQTIYIKTFGC
SHNQSDSEYMAGQLSAFGYSLSDNPQEADLWLINTCTVKSPSQSAMDTLIAKCKIAKKPL
VVAGCVPQGSRDLKELEGISIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLPVLDLPKVR
RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVIADGVKEIWLSSEDT
GAYGRDIGVNLPILLNAIVSELPPDASTMLRIGMTNPPFMLEHLKEIAEVLCHPCVYSFL
HVPVQSGSDAVLSAMNREYTESEFRTVVDTLIELVPGMQIATDIICGFPGETNEDFAQTV
SLIKKYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYNGMEGRIE
RIWITEVAADGIHLVGHTKGYVQVLVVAPESMLGVSAIVKITSVGRWSVFGEVMETINHK
NHKSVSRKDTGEDKFSPCSNACESYECTREPEPCACCGPESCVGQTPLEESAASRNSMFP
EDLNSRYLIGWLLRKRKNHANKRVEGEIASGSKRKQEWTQGSIGEWSVVDKALLGGMLAS
FFAIMALLILLGIRSMRSN
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggacgacatagaggatttggtagtgggagctggtgctcctcctgggtttcgcttgcct
ttaagcagcgttggagtgaatctcaagaagaagaggaacgataagttctatcaaacccaa
gactcaccctctcccaaaatccctggcactcagacgatatatattaagacctttgggtgc
tcacacaaccagagcgacagtgaatacatggctggtcagctttcagcttttggctactcg
ttaagtgacaatccgcaggaagcagacctgtggctaataaacacatgcacagtgaaatct
ccgagtcagtctgccatggacactctaatagcaaaatgcaaaattgcaaaaaagccccta
gtggtggcagggtgtgtgcctcaaggaagtcgagacttgaaagaactcgaagggatcagt
atagtcggagtccagcaaattgaccgagtggttgaagttgtggaagagaccttgaaaggt
catgaggtgcggctattgaatcgcaagacattgccagtgcttgacctcccaaaggtgaga
aggaacaagtttgttgagattcttccaattaatgttggttgtttaggtgcttgtacttat
tgcaagacaaagcatgctcgtggtcatttagggagctacacgattgatagccttgttggg
cgcgtaaaatctgttatagctgatggagtgaaggagatatggttgagcagtgaagatacc
ggagcctatggtcgtgacattggggtcaatcttccgattttgttaaatgcaattgtttct
gagcttcctcctgatgcaagcacgatgcttcggattgggatgacaaaccctccttttatg
ctcgagcacttgaaagagatagcagaggttttgtgtcacccatgtgtatactcatttcta
catgtaccggttcaatctgggagtgatgctgtcttaagtgcaatgaatcgggaatatact
gagagcgagtttaggactgtggttgataccttgattgagcttgtgcctgggatgcagata
gcaaccgatatcatatgtggatttcctggtgaaacgaatgaagattttgctcaaactgtc
agtcttattaagaagtacaagttccctcaagttcatatatctcagttttatcctcgaccg
gggacgcctgctgcaaggatgaaaaaggttccaagtgctgtagtgaagaaacgaagtcgt
gagttgacttctgtttttgaagctttcacaccatataatggaatggagggcagaatagaa
agaatatggataactgaagttgcagcagatggaattcacctggttggccataccaaggga
tacgtgcaggtgctcgtggttgctccagaaagtatgctgggagtttcagctattgtgaag
ataacatctgtgggaaggtggtcagtttttggagaggtgatggagactatcaaccacaaa
aatcataaatcagtgtcaagaaaggatactggcgaggataaattttccccttgctccaac
gcttgtgaaagttatgagtgtacaagagaaccggaaccctgtgcttgttgcggacccgaa
agctgtgtagggcagactcctttagaggaaagtgccgcttcaaggaattccatgtttcca
gaagatctaaacagccgatacttgatcggatggttattaagaaagcggaagaaccacgcc
aacaaaagagtggagggagaaattgcctcgggatccaagagaaagcaagaatggacccaa
ggaagcattggtgagtggagtgtagtcgataaggccctgctgggtggaatgcttgcgagt
ttctttgctatcatggctttactgatactactaggtattcggtctatgagatccaattaa
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