Coccidioides immitis: CIMG_03244
Help
Entry
CIMG_03244 CDS
T01114
Name
(RefSeq) DNA-directed RNA polymerase II largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cim
Coccidioides immitis
Pathway
cim03020
RNA polymerase
cim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CIMG_03244
09124 Replication and repair
03420 Nucleotide excision repair
CIMG_03244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cim03021
]
CIMG_03244
03400 DNA repair and recombination proteins [BR:
cim03400
]
CIMG_03244
Enzymes [BR:
cim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CIMG_03244
Transcription machinery [BR:
cim03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CIMG_03244
DNA repair and recombination proteins [BR:
cim03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CIMG_03244
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
HOATZ-like
Motif
Other DBs
NCBI-GeneID:
4564804
NCBI-ProteinID:
XP_001243803
UniProt:
J3KAX7
LinkDB
All DBs
AA seq
1750 aa
AA seq
DB search
MASVKFPFSKAPLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEARQRPREKGLNDPRL
GTIDRNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTS
DQKYLDALRFRDPKRRFDAIWRLSKDVLICEADPPPDDDDPFGKESSKIVKGHGGCGNAQ
PQIRKEGISLVGTWKPNKMRDMMDDTDIQQPEKKQITPQMALNIFRNVSEEDVRILGLSN
DYARPEWMVITVLPVPPPPVRPSVLVGGSSGGQRGEDDLTYKLAEIIRANQNVTRCEQEG
SPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGK
RVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKLGQLVDNGPDVHPGAR
YVIRSSGERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFNRQPSLHKESMMAHRVRV
MPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMG
IVQDTLCGIYKICRRDVFLTKEQVMNMMLWVPEWDGVLPQPAILKPRPRWTGKQMISMVL
PSGLNLLRVDRDKVPLAEKFSPLTDTGLLVHGGELMYGMFSKKTVGATGGGIIHTIYNEY
GPEVCMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDLATIQKIEEAVRIRKEEVDSITLSA
TENTLEPLPGMSVRETFESKVSRALNNARDEAGTETEKSLKDLNNAVQMARSGSKGSTIN
ISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHA
MAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQFLYGEDGLDGAF
IENQRVDVIRCSDEQFRNRFRIDLMDPENSLSPELLEQATEITGDMEVQRYLDEEWEQLQ
KDRAFLRSVAKEDEEMMQLPINVQRILESAKTTFRIREGTISDLHPADVIPQVQGLLDRL
VVVRGDDVISKEAQENATLLFKAQLRSRLAFKRLVVEYSLNKLAFQHVLGAIESRFAKAA
ANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATHIKTPSMT
VYQDPARAMDKESAKQLRSVVEHTNLRSVTEATEIYYDPDIQSTVIEADRDMVESYFIIP
EDVMDDLSRQSKWLLRIILSRPKLLDKGLTVQDVAMKIKESYPQDIAVIFSDNNADEQVI
RIRQIQDPKQDEEDDDDTEYDVTLKKLEAHLLDTLTLRGVAGVERAFINEKSRVRTLEDG
SLYKNSEDPQCKEWVLETSGSALGDVLAIPGVDATRTYSNQFVEILEVFGIEATRTALLR
ELTQVLAFDGSYVNHRHLALLCDVMTSRGFLMAVTRHGINRADTGALMRCSFEETVEILL
DAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQNMLMGVVSNNAGLVTMGNVDKGL
ISDGAATQYDSGSPMQENMYISSPDPDSQFSPIGQTGSETPAGFTEYQPPGFGGFSPAGA
RSPGGYSPTSPFNTSPTSPGYSPSSGYSPTSPGMSITSPRYMTSPGFSPASPTFAPTSPA
YSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPA
LGGATGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNFAGSPTSPGGPTSPGYSPTS
PTFNPTSPRQ
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgtaaaatttccgttctctaaggcgcctttgcgcaccatcaaagagatccag
tttggtcttctctccccagaagaaatcaaacggatgagtgtggttcacgttgaatatccg
gagacgatggatgaagcaagacagcgccctagagagaaaggtctgaatgatccgcgactt
ggtactatcgatcgaaattggcgttgcgcgacctgtgaagagggtatcaacgactgccca
ggtcattttggtcatattgaactgtccacaccggtcttccatattggtttcttgaccaag
atcaagaagctcttggagactgtttgccacaactgtggaaagatcaaggccaacacgagt
gaccagaaatacttagatgctctccgtttccgcgaccccaagaggcgctttgatgcaatc
tggcggctctcgaaagacgtccttatctgcgaagctgatcctcctcccgatgacgacgac
ccattcggcaaagaaagttcaaagatcgtcaagggccacggtggatgcggaaatgcgcaa
ccccagatccgaaaggaaggtatcagccttgttggaacttggaagccgaacaaaatgcga
gacatgatggatgacacggatattcagcagcctgagaagaagcaaatcactccgcagatg
gctctaaatatattcaggaatgtctcggaggaggatgttcgaatcttgggtctaagtaac
gactatgcgagacccgagtggatggtcatcactgttcttccagtacctccacctccagtt
cgcccaagcgtccttgttggtggaagctctggagggcagcgcggcgaagacgacctgacc
tacaagctggcagaaataattcgcgctaaccaaaacgtcactcgttgcgagcaagaagga
tctcctgagcatgtcgttcgcgaatttgagtcgctgctacagtaccacgtcgcaacatac
atggataacgatattgctgggcaaccgcaagctatgcaaaaatcaaacaggccagtcaag
gctatacgcggtcgtctaaaggggaaagaaggacgacttcgtcaaaacttaatgggtaaa
cgtgtcgacttttcagcacgtaccgttatcactggtgaccctaatctgtctttggatgaa
gtcggtgttcctgtcagcattgcacagactttgacttatccggaagttgtcaccccctac
aatattaataaactaggccagctagttgataatgggcctgatgttcatcccggagcgcgt
tatgtgattcgcagttccggggagcgcattgatctacggcaccacaagggcggcggtggg
cggaatttcttgcaatggggctggagagttgagcgccatctcatggacggagatgtcatc
ttgttcaatcgacagccctctctacacaaggaatccatgatggctcaccgcgttcgagtt
atgccgtactcgacgtttcgcttgaacttatccgtcacaactccatataacgccgatttt
gacggtgatgaaatgaacttgcacgtcccacaaagtgaagaagcgcgcgcagagcttaac
cagctatgtttggttccattgaatattgtttcgccgcagcgaaacggtccgttgatgggt
atcgtccaggatacactctgtggtatttacaaaatctgccgtcgtgatgtcttcttgacc
aaagagcaagtcatgaatatgatgctctgggttcctgagtgggatggtgtgctgccgcaa
cctgcaattcttaaaccacgcccgagatggaccggtaaacaaatgattagtatggtgcta
ccatctggtcttaatcttttacgcgtggatcgggataaagtgcccttagccgaaaagttt
tcaccattgaccgatacgggcctgctggtacatgggggtgaactcatgtatggaatgttc
tccaagaaaacagtgggcgcgactggcggcggtattatccatacgatctacaacgaatat
ggccctgaggtttgtatgaacttctttaatggcgctcaaaccgtggtaaactattggctt
ctgcacaatggattcagcattggtattggtgatacaattcccgatcttgctaccatccaa
aaaatcgaagaagcggtgcgaattagaaaggaagaagtggattccattactctcagcgcg
acagagaacacactcgaacctcttcctggtatgagcgttcgagagacgtttgaaagcaaa
gtttctcgtgctctcaacaatgctcgtgatgaagcaggtaccgaaaccgaaaagagcctg
aaggatttgaacaacgcagtgcaaatggcacgttctggttcaaagggttcgacgatcaat
atatcccagatgacagccgttgtgggacaacagtccgtggaaggaaaacgtatccctttc
gggttcaaatatcgcactttgccccatttcacgaaggacgattactcaccagaatcgcgt
ggctttgttgaaaactcttatcttcgtggtttgacacctaccgagtttttcttccacgcc
atggccggtcgtgaaggtcttatcgataccgctgtcaagacagccgagaccggttacatc
cagcgaaagcttgttaaggcattggaagaagttatggtcaagtatgatggtactgtccgc
aattcactaggagatgtcatccaattcctctacggtgaagatggtctcgatggagcattc
attgagaaccaacgtgttgacgttatcagatgctctgatgaacaattccgcaatagattc
cgtattgaccttatggatccggaaaactctctgtcccctgaacttctcgagcaagctaca
gagatcaccggtgatatggaagtgcaaagataccttgatgaagaatgggagcaattgcaa
aaggaccgggcctttttgcgttctgttgcaaaagaggatgaagagatgatgcagttgccg
atcaatgttcagcgaattctagagtcggcgaagactacattcaggattcgtgaaggcacg
atcagtgacttacaccctgcagacgtcattcctcaggtacaaggactacttgaccgcttg
gttgtggtccgtggcgacgacgttatatcaaaggaggcacaagaaaacgctacattgctt
ttcaaagctcaacttcgttctcgattagcgttcaagcgtttagttgtggaatactcgttg
aacaagcttgcctttcagcatgtccttggcgccattgaaagtcgattcgcgaaagcagcg
gcaaacccgggcgaaatggtcggtgtcttggcggcgcaatctattggagagccggcaacg
caaatgacattgaatactttccattttgctggtgtttcttcgaagaacgttactctaggt
gttcctcgtctgaaggaaattctcaatgtcgccacccatatcaaaaccccgtcgatgacc
gtgtatcaagatcctgcacgtgcaatggacaaagaatccgccaagcaactccgtagtgtt
gtcgagcatacaaacctaagatccgtgacagaggcaaccgaaatctactatgaccctgac
attcagtcaacagtcattgaagctgatcgtgatatggttgaatcatacttcattatccct
gaggatgttatggatgatttatctcggcaatccaaatggctgctccgtatcattctgagc
cgacctaaactcctggataagggtctcactgtccaagatgtggctatgaaaatcaaggag
tcctaccctcaagatattgcggtcattttcagtgacaacaacgctgacgaacaagtcatt
cggattcgtcaaatccaagatcccaagcaggatgaagaggatgatgatgacactgaatat
gatgtaacgctaaagaaacttgaagctcatttacttgatacacttactctacgtggtgtg
gcgggagttgagcgtgcgttcattaatgagaaatctcgagttcgtacccttgaggatgga
tctctttacaagaacagtgaagatccacaatgtaaggaatgggtccttgaaaccagcgga
tctgccctcggcgatgttctagctatcccaggagtcgatgctactcgaacatattccaac
cagttcgttgagattctcgaggtatttggaatcgaggcaacccgaaccgccctcctgcga
gaattgacccaagtgcttgcgttcgatggttcatatgtcaaccatcgtcacttggctctg
ctctgcgatgtcatgacttcgagaggattcctcatggctgtcacaagacatggtatcaac
cgtgcggacaccggagcattgatgaggtgttctttcgaagaaactgttgaaatcctgctc
gatgcagcagcattcgccgagcttgatgattgtcgaggtgtttcggagaatcttatcctg
ggtcaaatggcacctgctggtactggtgaatttgacgtttacctcgaccagaatatgctt
atgggggttgtgtccaacaatgctggattagtcaccatgggtaacgtcgacaaaggtttg
atttccgatggagcggcaacgcagtacgatagtggttcgccaatgcaagagaatatgtat
atcagctcgcctgatccagattctcagttctctccaatcgggcaaaccgggtctgaaact
ccagctggatttactgagtatcaaccgccaggattcggtggcttcagcccggctggagcg
agaagtcctggtggctactcgccgaccagccctttcaataccagcccaacatcccctgga
tattctccttcctcgggttactctccaacctcccccggcatgagcattaccagcccacgg
tacatgacatctcccgggttctctccagcgagccctacctttgcgcccacctccccagcg
tattctccgacttctcctggctatggacaggctcagtcacccacctccccttcatactcg
cctacttctcccgggttctctccaacttctccaagctacagcccaacgtcaccaagtttc
agtccagcttctcccgccttcagccctacttcacctagctacagccctacgagccctgct
cttggcggtgctactggcagacacctttccccaacttcacccacctcgccgaaatatacc
cccacttcacctggttggtcacctaccagcccagaagcgtattcaccaacttctcccaat
tttgctggttccccgacttctccaggtggtcctacttctccaggctatagcccaacatct
cccaccttcaacccgacgtctccccgccagtag
DBGET
integrated database retrieval system
