Ciona intestinalis (yellow sea squirt): 100176944
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Entry
100176944 CDS
T01056
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cin03016
]
100176944
Enzymes [BR:
cin01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
100176944
Transfer RNA biogenesis [BR:
cin03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
100176944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Spond_N
Motif
Other DBs
NCBI-GeneID:
100176944
NCBI-ProteinID:
XP_002121617
Ensembl:
ENSCING00000009576
LinkDB
All DBs
Position
3:complement(2732283..2738762)
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AA seq
560 aa
AA seq
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MPSACTSYLDDIEDIVTQDVNTARPLLDTGVVLRSKRNQKTKIQKVLGVELEDDTIQSNI
PATQTIFVKTWGCTHNSSDSEYMAGQLASYGYNVVTENGDNADLWLLNSCTVKNPAEDHF
RNMISKAQSLNKQVVLAGCVSQGAPKQSYIQGLSIIGVQQIDRVVEVVEETLKGNTVRLL
KQKKENGRKIGGASLDLPKIRRNPFIEIISINTGCLNSCTYCKTKHARGNLGSYPVAEIV
QRAIQSFGEGVVEIWLTSEDTGAYGRDIGTSLPELLWELVKVIPVGCMLRVGMTNPPYIL
DHLEEMGKILNHPNVYSFLHVPVQSGSDQTLHEMRREYTASDFELVVDTLRASVPGISIA
TDIICGFPTETDEDFEDTMTLCEKYKFPSLFINQFFPRPGTPAARMPQIHRQEIKKRTKR
LSELFRSYEPYGHQLGKIQKVLVTEIAHDQIHYVGHNKYYEQVLIPMDEDLTGKMFEVEI
VETGKHFLKGKRIDSSVPVTPVTVQPVPLGCVSGDNVNVKLKEANETRAVPNLSTYLMNN
HKFFVVLFAIVFYFIMKWFV
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgccttctgcttgtacatcttacctggatgacatcgaagacatcgtaacacaagatgtc
aacacagcgaggccacttctagacacgggtgttgtgcttcgtagcaagagaaatcaaaaa
acaaaaattcagaaggttttaggggttgaattggaagatgatacaattcagagcaatatt
ccagccacacaaacaatctttgtgaaaacatggggctgcacgcataactcatccgattct
gagtacatggctggccagttagcttcttatggatacaatgttgttacagaaaacggtgac
aacgctgacttatggttgttgaacagctgcacagttaaaaacccagcagaagatcacttt
cgaaacatgatcagcaaagcacaaagtttgaacaagcaagttgtattggctggttgcgta
tcgcaaggagcaccgaaacaaagttatattcaggggctttcaatcatcggtgttcaacaa
attgatcgagttgttgaagtggttgaagaaacattgaaaggaaacacagttcgtttgttg
aaacagaaaaaggaaaacggaagaaaaattggaggggcgtcacttgaccttccgaaaatc
cgaagaaatcctttcattgaaataatcagcatcaacactgggtgtctcaactcatgcaca
tattgtaagacaaagcacgctcgtggtaacttgggtagttatcctgttgcagagatcgta
cagcgcgctattcaatcctttggagagggtgtagtagagatatggttgacaagtgaagac
actggtgcttatggtcgtgacattggaacctcactacctgaattactgtgggagttggtc
aaagtaattcctgttggttgtatgcttagagttgggatgaccaacccaccgtatatactt
gatcacttagaggaaatgggtaaaattctcaatcacccaaatgtgtactcattcctgcat
gtaccagttcaatccggttctgaccaaacattgcatgaaatgaggagagaatacactgcc
tctgattttgaactggttgtggatacattgagggcaagcgtgcctggaatatcaatagca
acagatatcatatgtgggtttccaacagaaacagatgaggattttgaagacaccatgact
ttgtgcgaaaaatacaaatttccgagtctgttcatcaatcagtttttcccgagacccgga
actcccgctgcaagaatgccacaaatccatagacaagagataaaaaagcgaacaaaacgt
ttatctgagttgttcagatcatatgaaccatacggtcaccaacttggaaaaatacagaaa
gttcttgtgactgagattgcccatgatcagatacattatgtcggacacaataaatattat
gaacaagtacttattccaatggatgaagatctcacgggaaagatgtttgaggtggagatt
gtggagacaggtaaacactttcttaagggcaagcgaatagattcaagtgttcctgtaact
ccagtcacagtgcaaccagttccactgggttgcgtttcaggtgacaatgtaaatgtaaag
ttaaaggaggcaaatgagacaagagctgtgccaaatttatcaacttatttaatgaacaat
cataaattttttgttgttttattcgcaattgtgttttattttatcatgaagtggtttgtt
taa
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