Ciona intestinalis (yellow sea squirt): 100183393
Help
Entry
100183393 CDS
T01056
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2-like
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100183393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100183393
Enzymes [BR:
cin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100183393
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
100183393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
Cytochrome_C7
Motif
Other DBs
NCBI-GeneID:
100183393
NCBI-ProteinID:
XP_002131003
Ensembl:
ENSCING00000003329
LinkDB
All DBs
Position
4:complement(3037576..3059068)
Genome browser
AA seq
1144 aa
AA seq
DB search
MPSIPLQSKLPRVTEPSLKNLTKLNYGKPEEAQHPPIQDLTRPHVDSFNWFVNDGVKLLA
KGLAPLEVLINNDRLALSFTDISVEKPKIEDGFRNCRTTQVYPSECRQRGATYQAKIQAS
LSFEINGMKQGTIPRCLGTIPIMVKSDRCNLHGLSPKELVEKQEEEQEMGGYFVVNGNEK
VVRMLIMQRRNYPVGIVRPSWKNRGQNYTEFGVSVRSMTEDQTTAPFVLHYLSNGTVTIC
VYHRKEMFFLPLVLILKALVPFSDRDIYKELIKTKEDDTYFTCCVQNMLRQAQAYNLFEQ
KDFLRYLGEKFRIKLNRASWYSDTDIAHFMLKHHVLIHLDSNEDKFRLISFMTRKVFDLA
LGKCMPDDADSVQNQEVLLPGHLFQMVIKEKLNLWLLTLSRVVLRKATAAKAKTAIPGLS
SVLIQNSMSSVPDVTSAMSYLLATGTLVSNTGLGLMQFAGLTVIADKLNYMRYISHFRCI
HRGAFFAQMRTTTVRKLLPESWGFLCPVHTPDGSPCGLMNHMSFLCEIVTHPPSNDAMLP
LLNRLGMLSPTTSEVAGFGKFYPVILDGKLIGWMPVHQGHQAVNVIRCKKARGQDNVPIT
LEICLIEYTGKPTQYPGLYLMSQEARMVRPVMNLITGTVEMIGSFEQVYMNICIIPEEAH
KMTTHQELSQHSILSAVASLTPYSDFNQSPRNMYQCQMGKQTMGTPCQAIAYRADNKLYR
IQTPQAALVRPYMYDHYKMDNFPFGQNAVVAVISYTGYDMEDAMILNKGSFDRGFAYGTI
YKTDLIDLSSKVGDRTVNVTFGTNPKDDRFPDLNLGADGLPAVGQRLLTGDNYYSYIDHS
NSEMKVVKYSGQETGYVDSVRVLSNNAGTGHFKRVSIVLRVQRNPIIGDKFASRHGQKGI
CSQKWPMANLPFTESGMFPDIVFNPHGFPSRMTIGMMIESMAGKSAAMHGHCYDATPFTF
TEDKPAIEFFGDLLTEAGYNYYGTETMYSGVSGLEMEAQIFIGIVYYQRLRHMVSDKFQV
RTTGPVDMITQQPVKGRKRAGGIRFGEMERDALLAHGCAMLLYDRLLTSSDCSKARLCEK
CGSLLTTMIEKEQDGTHVHLSEQKWICRACHTGDHIVLVDIPFVYRYLVNELAAMNIKTI
LSVE
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgccttcaatacctttacaatcaaaactgccaagggttacagaaccatctttaaagaat
ttgacgaagttgaattatgggaaacctgaagaagctcaacaccctcctatacaggacctc
acaagacctcatgtagattcattcaattggtttgttaacgatggtgtgaaactccttgct
aaaggacttgctccattggaagtgcttatcaataatgacagactcgcgctttcatttact
gatatatctgtcgaaaaacccaaaattgaagatgggtttagaaactgcagaacaacgcaa
gtttacccttctgaatgtaggcagcgtggggctacttaccaagcaaaaattcaagcttca
ttgtcttttgaaatcaacgggatgaagcagggaacaataccaagatgcctcggtaccatt
ccaatcatggtaaagtcggatagatgcaacctccatgggttaagtccgaaagagctggtt
gagaagcaggaagaagagcaagagatgggaggttattttgttgtcaacggaaatgagaaa
gtcgtccgaatgctcatcatgcagaggaggaattatcctgttggaatagttcggccttct
tggaagaaccgtggacaaaattacacagagtttggtgtgtccgtacgctcaatgactgaa
gaccaaacaactgcaccatttgttcttcattatcttagcaatggaacggttactatctgt
gtgtatcatcggaaagaaatgttttttcttccacttgtgcttattctaaaagctctagtg
ccgttttcagacagggatatctataaagagctcatcaaaactaaagaggatgacacttac
ttcacctgctgtgtgcaaaacatgcttcggcaagcacaagcatacaatttgtttgaacaa
aaagattttctacggtacttgggcgaaaaattcagaataaaattaaaccgggcaagttgg
tatagtgatacagacattgctcatttcatgctaaaacatcatgttcttattcatttggat
tctaatgaggataagtttcgactaatttcttttatgacaagaaaagtattcgaccttgct
ttgggaaaatgcatgcccgatgatgcggactctgtgcaaaaccaggaagttctgcttcca
ggtcatttatttcaaatggtcataaaagaaaaacttaatctttggttgcttacactgtcc
agagttgttctaagaaaagcaacagcagcaaaagcaaaaactgccattccgggcttgagt
tcagtgctcatacaaaacagcatgtctagtgtgcccgacgttactagtgctatgagttat
ctgcttgctacaggtacccttgtgtccaacacaggtttaggactcatgcagtttgcagga
cttaccgtgattgctgataagttgaactacatgcgatatatatctcactttcgttgcatc
catagaggagcattttttgctcaaatgagaacgacaactgtgcgaaaactacttccagaa
tcatggggcttcctctgtcccgtgcatactcctgatggctcaccatgtggtctcatgaat
cacatgagttttctttgtgaaattgtgacacatcccccatcaaacgatgcgatgctccct
ttacttaatcggttgggcatgctttccccaaccacaagtgaggttgctggctttggcaag
ttttatccagttatacttgatggcaaactaatcggttggatgcctgtacaccaaggccac
caagcagtaaatgtaattcgttgtaaaaaggcacgaggacaggataacgttcctattact
cttgaaatttgcctaattgaatacactggaaaacccactcagtatcctggcctgtatctc
atgtcacaagaagcaagaatggttcgtcctgtcatgaacctcatcacaggcactgttgaa
atgattggttcgtttgaacaagtctacatgaacatctgcatcatacctgaagaagctcac
aaaatgacaacgcatcaagaactgagccagcattctatactaagtgctgttgcgtcactg
acaccttactctgacttcaaccagtcaccaagaaatatgtaccagtgccaaatgggtaag
caaacaatgggtacaccgtgccaggcaattgcatacagggctgacaacaagctgtacaga
attcaaactccacaagcagcattggtaagaccatacatgtatgatcactacaaaatggat
aactttccatttggtcaaaatgcagtggtagcagtgatcagttatacgggttacgacatg
gaggatgccatgatattaaacaaggggagttttgaccgtggattcgcgtatggaactatt
tacaaaaccgatcttattgatttatcttcaaaagtgggcgatagaaccgttaacgtaaca
tttggcacaaatccaaaagatgatcgatttcctgatctgaatttgggagcagatggactc
cctgctgttgggcagagactgcttactggtgacaattattacagctatattgaccatagt
aattctgaaatgaaagttgtaaagtactcaggtcaagaaactggttatgttgacagtgtt
agagtactgagtaataatgctggtacgggtcactttaaaagagtatccattgttttaaga
gtgcaaagaaaccccattattggcgacaagtttgcaagtcgacatggacaaaaaggtatt
tgttctcagaaatggccgatggcgaatctccccttcactgagagtggaatgtttcctgat
atcgtatttaaccctcatggttttccatctcgtatgacaataggaatgatgattgaaagt
atggctggaaaatcagctgctatgcatgggcattgctacgatgcaacgccttttactttc
actgaggataaaccagcgattgagtttttcggcgatcttttaacagaagctggatacaat
tattatggaacagaaacaatgtacagtggtgtcagtggccttgaaatggaggctcaaatt
tttattgggatcgtttattaccaacgacttaggcacatggtgtctgataagttccaagtg
agaacaactggccctgtggacatgatcacacaacaaccagtgaaaggaaggaaacgtgca
ggtggtatccggttcggggagatggaaagagatgctctgcttgcccatggttgtgctatg
cttctatacgatcgacttctgacaagttcagattgctccaaagcccgcttgtgcgaaaaa
tgcggtagtcttcttactaccatgatagaaaaggagcaagacgggacacatgtacattta
tctgaacaaaaatggatatgcagagcgtgccatacaggcgatcatatcgtgcttgttgat
attccatttgtgtacagatatctcgtcaatgaacttgctgcaatgaacattaaaactatt
ctgtctgttgagtaa
DBGET
integrated database retrieval system
