Ciona intestinalis (yellow sea squirt): 100185039
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Entry
100185039 CDS
T01056
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC1-like
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100185039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100185039
Enzymes [BR:
cin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100185039
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
100185039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF2703
Motif
Other DBs
NCBI-GeneID:
100185039
NCBI-ProteinID:
XP_009858083
LinkDB
All DBs
Position
3:complement(5546634..5551341)
Genome browser
AA seq
1391 aa
AA seq
DB search
MVKEQYRATDVAKKISQVCFGVQTPQEMRQYAHLQVVPKILYSQDLSHQAVEHGVLDRRM
GTSQKDKNCDSCGKNLAECVGHYGYVDLELPCFHAGYFRAVINILQMICKSCSRVMLMEA
DKHAYKDTLKRPGLTYLQLRSLRKKIHTQARKCSSCFYCGAMNGTVKKCGLLKIVHEKYK
SMTKKIIRPEIEEFYQSFNLAVKHNKELESYVHRAHEDLNPLVVLELLRNIPDKDVPLLV
MKAQASRPEDLIITRIIVPPLCIRPSVITDLKSATNEDDLTMKLTEIIFLNDVIQKHRAT
GAKSHMIMEDWDFLQLQCALYINSELSGIPFNMKPQKPTRGFVQRLKGKQGRFRGNLSGK
RVDFSGRTVISPDPNLRIDQVGVPVHVAKVLTYPERVTKSNIELMRKLVINGSDNHPGAN
FIQQRHNNMKRFLKYGNREKTANELRYGDIVERHLMDGDVCLFNRQPSLHKLSIMAHFAK
VADHRTFRFNECVCNPYNADFDGDEMNLHLPQTEEAKAEALFLMGTKNNMVTPRNGEPLI
AAIQDFITAAYLLTQKEVFFTRAQAARIISYIIAYEDRQTKIDLPPPCIIKPATLWTGKQ
IFSLILKPNKECPVRACLRAKGKQYCGKGEDLCYNDSFVVIYNSQLLAGAMDKSTLGSGS
KNNIFYILLRDYGQKVAADAMWRLARICPVFLSNRGFSIGIGDVTPGEGLLQAKHELLTE
GYRKCDEYIMALARGKLPAQPGCTPEQTLEAVILKELSVIRDYAGKACLRELDKSNTPLI
MAVCGSKGSFINISQMIACVGQQAIGGNRVPNGFEDRPLPHFEKHSKDPAARGFVANSFY
SGLTATEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCGHYDLTVRSSTKDVVQ
FVYGEDGLDPTDMEGKNRPVDFTRVLQVVQANFPCQHQPPLCEKSVKKQAEELIQKKQDL
SEDFRQDLLKFLNTYAEDLTKTRTRYGINDNGKTEPAVLYELLRITSKQLKEFIDMACSK
YMKARLEPGTAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNIS
TPIITAQLTNDKDADIARVAKGRIEKTTLGEICSLMEEVYQPDDCYILIKIDLQRCRLLK
IEVNADTVRYNLCTSRLPIKPAQVVIQCKDIITMHPAANTKQSLYNVIQSLKEAVPKVVV
QGLQAVSRAVIHIDESDGGSEKYKLLVEGNDLRGVMAIPGVVGEKTTSNNTMEVERCLGI
EAARQTIINEVEYTMVSHGMSIDRRHLMLLADLMTYKGEVLGITRYGLARMKESVLMLAS
FEKTSDHLFDAAYYGQTDVITGVSECIIMGIPMNIGTGIFKLLHKPVKKVQSLKRNLIFD
QPELHLNTVPK
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atggtaaaagagcaataccgtgcaacagatgttgccaagaaaataagccaagtatgcttt
ggggttcaaacaccccaggaaatgagacaatatgctcacttgcaggtagtacccaagatt
ctttatagccaagacttgagtcaccaagctgttgagcatggagtgttggacagacggatg
ggcacgagtcaaaaggataaaaactgtgacagttgtggtaaaaacctcgcagaatgtgtg
ggacattatgggtatgttgatctcgaattgccgtgctttcatgctggctatttcagggca
gttattaacattctacaaatgatctgcaaatcttgcagtcgtgtcatgttgatggaagcg
gataaacatgcgtataaagacacactgaaacggcctgggcttacttacttacagttgcgg
tctttgaggaaaaagattcacacgcaagcaagaaaatgcagttcgtgtttttactgtggt
gctatgaatggcacagtaaaaaaatgcggcttacttaaaatagtccatgaaaaatacaaa
agcatgaccaagaaaattattcgtcctgaaattgaggagttttatcagtcatttaatttg
gctgtgaaacacaataaggagctagaaagttatgttcatcgtgcacatgaagatttgaac
cctttggttgtgctggagttgttgagaaatatccctgacaaagatgttcctttgcttgta
atgaaggcgcaagcaagcaggcccgaggatttgataataactcgtattattgtgcccccg
ttgtgtattagaccttcagttattactgatttaaagtcagctacaaacgaggacgatctg
accatgaaactgaccgagataattttcttaaatgatgtaatacagaagcacagagcaaca
ggtgctaagtcacatatgataatggaggattgggacttcctgcagctgcagtgcgctctc
tatataaacagtgagttatctggcattccgtttaacatgaagcctcaaaaacctacaagg
ggttttgtgcagagactcaaaggtaaacagggaagatttcgtggcaatctttcgggtaag
cgagtagatttttcgggccgtacagtaatttctccagatcccaacttgcgtattgatcag
gttggagtaccagttcatgtcgccaaggttctcacatatcctgagcgtgtgacaaaaagc
aatattgaattaatgagaaagttggttatcaatggctccgataatcaccctggtgcaaac
tttatacaacaaagacataacaacatgaaacgttttctaaagtatggtaaccgtgaaaaa
acagctaatgagttacgctatggtgatattgtcgaaaggcatcttatggatggagatgta
tgtctgttcaaccgacaaccttcactgcataagctgagcatcatggctcactttgctaaa
gtagctgaccatagaacattccggtttaatgagtgcgtgtgcaatccatacaatgctgat
ttcgatggtgatgaaatgaacttacacttgccacaaactgaagaagctaaggctgaagct
ctgtttttgatgggcaccaaaaataacatggtaacacctcgcaatggtgagcctcttata
gctgccattcaggactttatcacagcagcctacctactcactcagaaagaagtgttcttt
accagggcccaggcagcgcgaattattagctacattattgcatatgaggatcgtcaaacc
aagatagaccttccccctccatgcattattaaacccgctactttatggacaggaaagcaa
atctttagtctgattcttaaacctaataaagaatgccctgttagagcgtgtcttcgggcc
aaaggcaagcaatactgtgggaaaggagaggacctatgctacaacgattcttttgtcgta
atttacaactcgcaacttctggctggtgcaatggataagtccacattgggctctggttct
aagaacaacatattctacattttgctgagagattatggacaaaaagtagctgctgatgca
atgtggcgacttgcacgaatctgcccggttttcctgagcaaccgtgggttctctattgga
attggagatgtaactccaggtgaaggtcttctgcaggcaaagcatgaattactcactgaa
ggatacagaaagtgtgatgaatacattatggccttagctcgtggtaaattgcctgcacag
cctggctgcacgccagaacaaactctagaagctgtcatcttgaaggaactgtcagttatt
cgtgattacgcaggtaaagcttgcttgcgtgaattagataagagcaacactccacttata
atggcagtgtgcggatccaaaggttcttttatcaatatttctcagatgatcgcttgtgtg
ggacagcaagctattggaggcaacagggtaccgaatggttttgaagaccggccattaccc
cattttgaaaagcattctaaagatcctgcagctagaggctttgttgctaacagcttttat
tcaggtttgacggcaactgagtttttcttccacactatgggtggtagagagggcttggtg
gacacagcagttaaaacagcagagactggatatatgcagcgtcggttagttaaatctcta
gaagatctgtgtggccattatgatcttacagtccggtcgtctactaaagatgtggtacag
tttgtgtacggggaagatggcttagatccaactgacatggaaggaaaaaatcggcccgtt
gattttacacgagtgctgcaagttgtccaggcaaattttccctgccagcaccagccccct
ttgtgtgagaagtcagtcaaaaaacaagctgaagaattaattcaaaagaagcaagacctc
tctgaagactttcgtcaagatttgttaaaattcttaaacacgtatgctgaggatttgacc
aaaactcgaacccggtatgggataaatgataacggaaaaacagagcctgctgttctgtat
gaattgctgaggataacttcaaaacaattgaaggagtttattgatatggcttgctcgaaa
tacatgaaagcacgcctggaaccaggcactgctgttggggcactgtgtgcgcagagtatt
ggagagccaggaacccagatgacactgaaaacttttcactttgccggtgttgcatccatg
aacatcacgcttggtgttcccaggatcaaagagattatcaatgcttcaaaaaacatcagt
actcccattatcactgctcagttgacgaatgataaagatgctgacatagctcgtgttgct
aaaggtcgaatagaaaagaccacactgggtgaaatttgttctttaatggaagaagtatat
cagcctgacgattgctacattctcatcaaaatcgacctgcaaagatgccgacttctcaag
attgaagttaatgcagacactgtacgttataatctttgtacgtctagacttcccataaag
ccagctcaggttgtcatccagtgcaaggacatcattaccatgcatccagcagcaaacaca
aagcagtcgctatataatgtcattcaatcgttaaaggaggcagtgcctaaggtggtggtg
caaggtttgcaagcagtttctcgtgcagtcattcatattgatgaatcagatggagggtcg
gagaaatacaaacttctagttgaaggcaatgacttgagaggtgtgatggccattcctggt
gttgtcggtgaaaaaactacttctaataacaccatggaagttgaaaggtgtctaggaatt
gaagctgcgagacagaccattatcaatgaagtcgaatacacaatggtgagccatggaatg
agcattgaccggcgacacctcatgctgcttgccgatctgatgacctacaaaggggaggtg
ctcggtataacgcgctacgggcttgcccggatgaaagagagtgttctgatgcttgcgtcg
tttgagaagacatcggaccacctctttgatgctgcatattatggacaaacagatgtgata
actggtgtgtcagaatgcattatcatgggtatacccatgaacattggaactggtattttt
aagctgcttcacaaaccagtaaagaaagttcaaagcctgaaacgaaatttgatttttgat
caaccagaacttcacttgaacactgtaccaaagtaa
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