KEGG   Citrus sinensis (Valencia orange): 102607057
Entry
102607057         CDS       T02983                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    102607057
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cit03021]
    102607057
Enzymes [BR:cit01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     102607057
Transcription machinery [BR:cit03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     102607057
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 102607057
NCBI-ProteinID: XP_015385387
LinkDB
Position
3:complement(join(6770872..6771042,6771714..6771825,6772495..6772751,6773023..6773160,6773268..6773441,6773552..6773811,6774411..6774559,6776415..6776533,6776635..6776701,6776813..6776982,6777235..6779103,6779211..6779306,6779429..6779584,6781694..6781903,6781985..6782035,6782995..6783116,6783214..6783334,6783925..6784014))
AA seq 1443 aa
MDNEFCEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSS
CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQ
PRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDA
QQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPH
AFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKK
NIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSW
NWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSI
HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK
QLINQQSGRNLLSLGQDSLTAAHLLMEDGVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS
VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKV
LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLM
VDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSK
DNSLLGMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECA
KSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYD
GTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSP
LLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSM
IIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDML
ISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKK
VDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPD
NIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLA
LQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDII
YSGEGRTLSKPVDVYNLLSTPVSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDF
ETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLG
IEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKRL
GTA
NT seq 4332 nt   +upstreamnt  +downstreamnt
atggacaatgaattctgtgaagaagggctggaagtgccctctggtatcctgactgggata
tctcttggaatttcaacagacactgaaaaagaaaagttatccgtaatggaaattggtgca
gtcagtgaggtcaccaatcctaggttggggcttccgaacccaactaatgagtgctcctca
tgtggagctaaagataggaaagcctgcgaagggcactttggctttatcaagtttccattc
acaatactacatccatattttctatcagacattgcaaagcttttaaatagtatctgtcct
aagtgcaaaactatccggaaagaaagacaaaagggggctggttcttcacggaaagaacag
ccaagggtttgcaaatattgtgttcgaaatcctgcacaatggtacccaagaatgcggttt
aaactttcatctaaagatctctcagggaaaactgctattattgttgaaatagatgaaaag
ctgtcaaagaagaataaaaaattgcctgatgattactggggttttattccatttgatgct
caacaagaagaaaatagtgtgaaaccaaacagaaaggttttatcatgtaaacaggtaagt
tatttgttgaaagatgttgatccaagtatcagagaggagtttattttgagtaaagatgct
cccttcctcaaatgtttcccagtaacaccaaataatcaccgtgtgacagaagttccacat
gcattttcgcatgaaaagaaattgttttttgataattggaccaggcatttaaagaaaatg
gttgactacagagggagagatattgaattgagtcatctcgttcaggactgcttgaagata
tcaaagttacacttagacaagtcatcgagaaaagattctgctgaggtccgacaaaagaag
aatattgatatttccaacagctctggtctcagatggatcaaagatgttgttcttgggaag
agaaatgatgattgttttcgcatggttgttactggtgaccctaacattaaactcaaagaa
attggtataccctgtcaagttgcagagaggttacaaatttctgaacgtctgaactcttgg
aactgggaaaggctaagtgtctgcattagttttcgtcttcttgagaaaggggagctttat
gtttgcagaaaaggtgggctggttcgtattcgacgtattgatgcacttgaattaggggat
ataatttataggcccctaactgatggtgacattgtattgataaacaggccaccctccata
catccgcactccctgattgctctaacagtgaaggtccttccaataagctcagtggtcaca
ataaatccactttgttgctcccctttccatggggactttgacggtgactgccttcatgga
tatattcctcaagcaattggtgctcgagttgagctcactgagcttgttgctttagataag
caactaattaatcagcagagtggtaggaacttgctctcacttggtcaagatagtttgact
gctgctcatttactcatggaagatggtgttctattgagccatttgcaaatgcagcagctg
caaatgttctgccctcatcgatttctgtcacccgatattttcaaaatttcaaaggatagt
gtttggtctgggaagcagttattcagcatgctcttgcctccagattttgagtatacattt
ccatcaaaagatgtttatattagtggtgggaagctcatatctgctgaaggatcttcttgg
ctgcgtgactatgagggaaatcttttccaatatcttatcaagcgctatcgggataaagtt
cttgacttcttgtatgctgctcaggaagttctttgcgagtggctgtcagttaggggcatg
actgtttcactctcagacttgtacctcgcttctcactcatgctcccgaaaaattctgatg
gatgaaattttttatggtttgcgagaagctcaggacacttgtaattttcaacagctgatg
gtggattctcatatgaattttcttatgagtgctaaagatagtgaaagcaccaggtctttg
caaggggagcacctgtcttatgaaaagcagagatcagccgctctcagtcaagcttctgtt
gatgcttttaagcatgtgttctgggatatccagaatttagcctacaagtatgggagtaag
gacaactcattgttgggtatgtttaaggcaggaagcaagggtaatttactaaagctagtt
cagcatagcttgtgtcttggtctgcaacactcattagccccattgtcatttagatttccc
catgaactctcttgtgctgcttggaacaggctaagggctggggataatacagaatgtgcc
aagtcttatataccatccgctgttgttgaaaattcctttttgacaggattgaatccctta
gaatgttttattcattcagtaacaagtcgagacagttcttttagtgacaatgctgatctt
ccgggtactcttactcgaagacttatgttcttcatgcgtgatctgtgcacagcatatgat
ggaacagtgagaaatgcttatgggaatcagattgttcaattctcttataatattgagggg
acatctactccaacaggtgagatcggtgaccaacctgttggttcactatctgcttgcgct
atttctgaggcggcatacagtgcattagatcaacctatcagtttgctcgaaacttcaccg
ctgctaaatctaaagaacgtactggaatgcgggtcgaaaaaaagcaatgcggaccagact
atgtctctattcttatccaacaaactggggaaaaggaggcatggttttgaatatggagcc
ctggaagtcaagaatcatttggagtgcctaatgttgtcagatattgtttctacttccatg
ataatctactctccacagacgggcagcatgaagcattttagtccttggatatgccatttc
catgtgcgcaaggaaatcatgaagaggacaggattgaaagaacattccattattgattcc
ttgtaccggcagtgtaaagccgctagaacagaattgaaaatcagtgttcctgatatgctc
atttcaaacaaggactgttcttcaattaacatgcagaaggaatgcaatgacgcattctgt
gtcactgtcatgattgttgaaaacttcaagagaacttccatagatttggagacaattcaa
atgtgggtgatgcctttccttctgaaaacagtagtcaaaggattccgggagattaagaag
gtggatattttatggaaggataaacaaaaagcatcaaaatcccatgacgattcattcggt
gagctctatctgagggtttctatgtctgggcaatgtcatataacaagtttgtggagtgca
cttatgaatgactgccaccagataatggatatgattgactggacacgcagtcatccagat
aatattcgcagtttctgtttggcctatgggattgacgctgggttacaattttttctcact
aatttggagtccgctatatctgacactggcaagaacatacttcctgaacatttgcttatt
gttgctaatactctgtcagctacaggagagtttgttggcttaaatgcaaaaggcttggct
ctacaacgaaaacattcttctgtatcgtcaccttttgtgcaagcattcttttctaatcct
ggtgcttcctttattaaagctgcaaaggcaggagctgtggataatcttcaggggagtgta
gatgcactaggatggggaaaggtcccttctgtaggcaccggcggacactttgatattata
tattctggggagggacgcacactttccaagccagtggatgtatataacctcctgagcacc
ccagtcagttctaagcagaatgaaaaacttaaagtatgcaaagctcagggccttatatct
gacaaatgtggtgctaagtttggtgattttgcgtttaaagggctgggaaacctggatttc
gagaccatatctagaggggttttgagaaaatcttggacgtataacgatgtcctacggctc
agtaatgccttaaagaaaatattacacaaatattcaattggtcagaggttaagtgaaaag
gacaaaacaactgtgataagggctttatattttcatcctcgacgcaatgaaaagcttgga
attgagcctccagatatagaggttacctatcaccctgaacatcagaattcacgttgcttt
tcattggtaagagaagatggctcaattgaggacttctcatatcacaagtgtgttattggt
gctcttgagatcattgcccccgagaaagcagaaatctatcgggcaaaatggaaacgactt
ggtactgcatga

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