Citrus sinensis (Valencia orange): 102617026
Help
Entry
102617026 CDS
T02983
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03020
RNA polymerase
cit03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
102617026
09124 Replication and repair
03420 Nucleotide excision repair
102617026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cit03021
]
102617026
03400 DNA repair and recombination proteins [BR:
cit03400
]
102617026
Enzymes [BR:
cit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
102617026
Transcription machinery [BR:
cit03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
102617026
DNA repair and recombination proteins [BR:
cit03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
102617026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
102617026
NCBI-ProteinID:
XP_006467028
LinkDB
All DBs
Position
7:complement(join(685291..685426,685535..685591,685780..685851,686099..689202,689291..689549,689959..690245,690339..690674,690750..690891,690975..691195,691287..691448,692249..692407,692492..692791,693445..693708,693983..694066))
Genome browser
AA seq
1860 aa
AA seq
DB search
MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK
FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI
EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN
LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL
EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT
LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ
LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP
GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK
PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI
APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM
NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS
EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY
LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP
YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN
PQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYN
AGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSATKDDKNTKGDKSSR
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcgatttccatactccccggcggaggtggccaaggtccgcatggtccagttc
ggcattctcagtcccgatgaaattaggcaaatgtcagtggtacagattgagcatggtgaa
actaccgagagagggaagccgaagccaggaggtttgagtgaccctaggcttggtacaatt
gacagaaagatgaagtgcgagacttgtacggccaacatggcggagtgccctggtcatttt
gggcatttggagcttgctaagccgatgtttcatatagggtttatgaagactgtgctcagc
atcatgcgatctgtttgcttcaattgctcaaaaattcttgctgatgaggacgatcacaag
tttaagcaagccttgaaaattaggaatcccaagaacaggcttaaaaagattttggatgca
tgcaaaaacaaaactaaatgtgagggtggtgatgagattgatgtacctggtcaagatggt
gaagaacctcttaaaaagaacaagggtggctgtggtgctcagcaaccaaagctgactatt
gaaggcatgaagatgattgcggagtacaaggctcagaggaaaaagaatgatgatcaggaa
caacttcctgaacctgttgaaagaaagcagacacttactgctgaaagggttcttggtgtt
ctaaagaggataagcgatgaggactgtcaactcttaggattgaatcctaagtatgctcgt
ccagattggatgattctgcaggttcttccaattcctccacctccagtgaggccctcggtg
atgatggatacctcctctaggagtgaggatgatttgactcatcaattggcaatgatcatt
cggcacaatgagaatttgaggagacaggagaggaatggggcacctgcacatatcatatcc
gagtttgcacaattgttgcagtttcacatagccacatattttgataatgaattgcctggg
cagccaagggctactcagcgatcaggtagaccgattaaatcaatctgtagtcggcttaag
gcaaaggaagggcgcatcaggggtaacttgatggggaagcgtgttgatttctctgccagg
acggttataacaccagacccgactatcaacattgatcagttgggggtgccatggagcatt
gcattaaatctgacttacccagaaactgttaccccgtataacattgaaaggttaaaagag
cttgttgaatatgggccccatcctcctcctggaaaaaccggtgccaaatatatcataaga
gatgatggtcaaaggctcgatctccgttacttgaagaaaagtagtgaccaccacttggag
cttggttacaaggtggagcggcatctcaatgatggggactttgttctttttaatcgtcaa
cccagtcttcataaaatgtcaattatgggacatagaatcaagatcatgccatactcaact
ttccgcctgaatctttctgttacatcgccatacaatgctgattttgatggtgatgaaatg
aacatgcatgtccctcagtcgtttgaaactagagcagaagttttggagttaatgatggtg
cctaaatgcattgtgtctcctcaatcaaataggcctgtaatgggcatcgtccaggataca
cttttgggatgccgtaaaattactaaaagagataccttcattgagaaggatgttttcatg
aacatattgatgtggtgggaggattttgatgggaaagttcctcaacccacaattttaaaa
cctcggcctctttggactgggaaacaagtttttaatctgatcatacctaagcaaataaat
ctattcagaacggctgcctggcatgcagacaatgacaagggtatactcactgcaggggat
accctagttcgaatagaaaaaggggagctgctttctggaacgctttgcaagaagaccctt
ggcacatccacaggaagtcttatacacgttatttgggaggaagttggtccagatgctgct
cgcaagttcttgggacatacacagtggcttgttaactattggcttttgcagaatgctttt
agtattggaattggagatacaattgctgatgcaaaaacaatggaaactatcaacgatacc
atttctaaagcaaagaataatgtgaaaaaccttattaagcaagcccaagacaaaagctta
gagcctgagcctggacggactatgatggagtcatttgagaacaaagtgaaccaggttctg
aatacagctcgtgatgaagctggaagtagcgcgcagaagagtttatcagaaagcaataat
cttaaggcaatggtgacagctggatccaaaggaagtttcatcaatatatcacagatgact
gcttgtgtggggcagcagaatgtggaaggaaagcgtatcccatttgggtttgtagatcgg
acattgcctcattttactaaagatgattatgggccagaaagtcgagggtttgtggagaac
tcgtacctgcgtgggctgaccccacaggagttctttttccatgctatgggtggtagggaa
ggtcttattgatactgcagtgaagacttctgagaccggatacatccagaggcggctagtg
aaggcaatggaagatataatggtaaaatatgatggaactgtgaggaactcattgggtgat
gtaatccagtttctctatggcgaagatggtatggattcagtctggatagaatcacagaca
cttgattctttgaagatgaaaaagtcagaatttgataaggctttcagatttgagatggat
gaagaaaactggaacccgaattatatgctgcaagaatatattgatgatttgaaaacaatt
aaagaattacgagatgtttttgatgcagaagttcagaaacttgaagcagatagataccag
cttgcaacggagatagcaacctcaggtgatagttcttggccactccctgttaaccttaag
agacttatctggaatgcgcagaagactttcaaggttgatccgcgaaggccttctgatatg
catccaatggaagtagtcgaagctgttgataagctccaggagaggctgaaagttgttcct
ggtgaagatccattgagtgtggaagcccaaaagaatgccacccttttctttaatatcttg
ctccgtagcacttttgccagtaaaagggtgttgaaggagcacaggcttacccgtgaagcg
tttgagtgggttattggtgaaattgagtcacgattcttacagtcattagtagcacctggg
gaaatgattggctgtgttgctgcacagtcaattggtgaacctgccacccagatgactctt
aatacgttccattatgctggtgtgagcgcaaagaatgtcactctaggagttccaaggttg
agggaaattataaatgtggctaagaaaatcaaaactccttcactctctgtatttctgaaa
cctggcgttaactcaactaaggagagggccaagaatgttcaatgtgcactagagtacact
actctccgtagtgttactgaagctacagaagtatggtatgatccagatcccatgggcaca
attattgaagaggatgttgaatttgtcaagtcttactatgagatgccagacgaggacatt
gcacctgaaaaaatatctccttggttgcttcgcatagagctgaatcgggaaatgatggtt
gataagaaattaagcatggcagctgttgctgagaagataaatcaggagttcgatgatgat
ttgacttgcatattcaatgatgataatgctgataaactcatccttcgtattcgcataatg
aatgatgaagctccaaagggagaattgaatgatgaatcagctgaagatgatgttttcttg
aagaagattgagagtaacatgctgacagaaatggctcttcgaggtatccctgatatcaac
aaggtgtttattaaaaagggtaaaacaaccaaatatgatgataatgaaggatttaagtcg
gaagatgagtggatgctggatactgaaggtgtgaatcttttagccgttatgtgtcatgaa
gatgttgatgcgagaaggacaacaagcaatcacttgattgaaataattgaagtactagga
attgaggcagttcgtcgggcgctattggatgaattgagagtagttatatcttttgatggc
tcttatgtgaattaccgacatctggctatactttgtgatacgatgacctatcgaggccac
ttgatggccatcactcgtcatggcatcaacaggaatgatactggaccaatgatgagatgt
tcatttgaagaaacggttgacattcttcttgatgctgcagtctttgcagaatcagattat
ttgaggggggtcactgagaatataatgttaggtcagcttgcgcctattgggacaggagac
tgttcattgtatctcaatgatgagatgctgaaaaatgccatcgaacttcagcttcctagt
tatatggaaggtctggagtttggcatgacacctgctcgttctccggtgtctgggactcct
tatcatgatggcatgatgtctccaggttacttgtttagcccaaatctccgtctgtccccg
gtcacggatgcccagttttctccttatgttggtggaatggccttctctcctacttcatca
cccggatacagcccatcatcaccaggctacagtccgtcatctcctggatacagtcccacg
tcacctggatacagcccaacttcgcctggatacagtcccacctcgcctggatatagccct
acctcaccaacttatagtccaagttctcctggttatagtccaaccagtcctgcctattct
cctaccagtccatcgtactcacctacttcaccaagctatagcccaacctccccaagttac
agcccaacatccccaagctacagcccgacctctccaagttacagccccacttctcccagt
tacagtccaacttcaccaagctatagccccacctcaccggcatatagccccacctcacct
gcatatagccccacctcacctgcatacagccccacttcaccatcgtacagcccaacctct
ccttcctacagcccaacatcaccttcgtacagccctacctcaccgtcatacagccccact
tctccatcgtacagccccacttcaccagcctatagccccacttctcctggttatagtcca
acttcaccaagttatagcccaacttcaccaacctatagtcctacatccccaagctacaat
cctcagtctgccaaatacagtccgtcgctggcctactcaccaagtagtccaagattatct
cctgccagtccgtacagccctacatctccaaattacagtccaacatcatcttcgtattca
ccgacatctccctcttattctccttcgagcccaacatacagccctagcagcccatataat
gctggaggtggaaacccagactatagcccaagttcacctcagtatagtccaagtgctggg
tactctcccagtgcaccggggtattccccatcgtcgactagtcagtatacaccacaaaca
aatagagatgacagtgcgacgaaagatgacaagaacaccaaaggtgacaagagctcacgt
taa
DBGET
integrated database retrieval system
