KEGG   Citrus sinensis (Valencia orange): 102625708
Entry
102625708         CDS       T02983                                 
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1 isoform X1
  KO
K02999  DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    102625708
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cit03021]
    102625708
Enzymes [BR:cit01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     102625708
Transcription machinery [BR:cit03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     102625708
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 102625708
NCBI-ProteinID: XP_006493898
LinkDB
Position
9:complement(join(5902763..5903359,5903816..5904623,5904777..5904917,5905963..5906210,5906430..5906628,5906866..5907068,5908087..5908295,5910152..5910296,5910389..5910817,5911168..5911386,5911512..5911659,5911741..5911829,5912796..5913059,5914020..5914204,5915920..5916085,5917158..5917328,5917426..5917683,5917956..5918276,5918383..5918542,5918860..5919029,5919298..5919315))
AA seq 1715 aa
MNQTTEVTTESVKAVWFSFLTDEEVRKQSFLKLTEPLLLDRVSRPLPGGLYDPILGPLDE
TSSCKTCGQRQFLCPGHFGHIDLVVSVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKC
VRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW
TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCN
LGETFSGGEEEKDLGTSSDVDAPETHSFNGAFPGTQDTAARRHQKGSGAVPSGFKKQKDL
FSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQGFGKKAGHSIFFLGVVLVPPIKFRLP
SKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNA
AGQRDVASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLT
YPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGRKLDTSRGAI
VQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC
STYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAALLT
KKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWT
GKQVITAVLNHITRGRPPFIVERGGKLPQDFFKTRFNADKQSGRKKNDKGKLSKTNKMHK
DKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHT
VQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIGKR
VHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINDLLS
EGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWD
WAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIS
YDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAANQEMIYKKCSGQLDASNAYIME
LPDALKDNAEKFADKFLSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLAAQSVGEPSTQM
TLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKTEDDAKRLADKLKK
ITVADIVKKISVKVRAFTSHDGQACTVYVLTMELYKPKNYPTYTDITLEDWEEILEVVFV
RELEDTIQNHLLLLSKINGIKNVASGLTQKASNETDQEGSGNVSQCRGDDDDADDADGEE
AEDLGMDAHKQKQRATDEKDYEDGSEGEMNDGVSAAGFGSEIDQAESEIDDDQAETEIED
DRATNEIENSQDQASENLKPFTPKSSKKKSKSKTKRKKARAKLVKKDTDRAIYVAARGMH
FEAHFKFINEPNILLAQIARHVAKKVYIQSSGKIDQCQVTNCKESQVIYYGKDPKKREDI
KPEEKEKVQALHTTGVDFHAFWQLQDFIDVRYIYSNNIQAMLETYGVEAARETIIREIKH
VFGSYGISVNTRHLSLIADFMTHSGGYRPMSRLGGIAESVSPFSKMTFETASKFIVEAAS
YGQVDKLDTPSARICLGLPVKMGTGSFDLMQKLEV
NT seq 5148 nt   +upstreamnt  +downstreamnt
atgaatcaaacgacagaggttacgaccgagtctgtgaaggcggtttggttcagtttctta
acagatgaagaagttcgaaagcaaagttttcttaagcttacggaacctctattgctagac
cgagtcagtagacccttgcccggaggattgtatgatccaatattaggtcctctagatgag
acttcatcttgcaaaacctgcggccaacgtcagtttctttgtccaggtcattttggtcat
atcgatcttgtcgtttcggtttataatcccttgctgttcaatcttctttacactcttctc
aagaggatctgcttcttttgccatcattttaaagcgagcaggagagaggttgagaaatgt
gtgcggaaattggaactcatcataaagggtgatattattgctgccaaaagtttagactta
gacttacctagtgaatcctcaaatccagaggacagtgatgttagcaataaatcctcgtgt
tctatggttaccccaagaggaaattacgacaatgttagaaatttaaagcctcaagaatgg
acttctcttcagtttgctgaggcaaagctggctttacttcagtttttgaagattgagact
acaaagtgtgggaactgtaaagcaaagaatccgagaatcagcaagccaacttttggatgg
attcacatgaatggtatgccacatgctgatattagagcaaatttaattagaggatgcaac
ctaggggagacattttctggtggagaagaagagaaggatttaggaacttctagtgatgtt
gatgcccctgaaactcattcatttaatggcgccttccctggaactcaagataccgccgct
agaaggcatcagaaaggttcaggagcagtgccttctggtttcaaaaagcaaaaagatcta
ttttctggacctttgttgccatccgatgttaaagatattatcgagaaattgtgggaaaat
gagtttgaactctgctcattcatcagtgatatgcagcagcaaggatttggaaaaaaagca
ggtcactctatatttttcttaggggtcgttctggtacctccgataaaattccgccttcca
tcgaaaggaggtgattctgtgatggagcatcctcaaactgttttgcttagtaaggtgctg
caggccaatatatatctggcaaatgcttatgttaaccagccagataatgcgaaggtaatt
gttgctcgatggatgaatcttcagcagtctgtcaatgtgctttttgatggcaaaaatgct
gctggtcagagagatgtggcttcgggaatttgtcagttgctagagaaaaaggaaggattg
ttccgtcagaagttgatgggaaagagagttaattatgcttgtcgatctgtcatttcacct
gatccctatcttgctgtgaatgagattggaattcctccctattttgcactaaggctaacc
tatcctgagagagttactccttggaatgtcgtaaagttaagggattcgatcattaatggt
gctgaaattcatcccggagctacgcactatcttgataagttgtccactatgagactgccg
ccaaacaaaaaaatgcgaatttccataggaagaaaactagatacatcaagaggagcaatt
gtgcagcctggaaaggattctgataatgaatttgaaggcaagatggtgtatcggcaccta
caggatggagatgttgtgcttgtcaatcggcagcctacgcttcacaaaccgagcataatg
gcgcatgtagttcgtgtgctcaagggggagaagacacttcgaatgcactatgccaattgc
agcacatataatgctgattttgatggtgatgaaatgaatgttcacttcccgcaagatgaa
gtttctcgcgctgaagcttacaatattgttaatgcaaataatcagtatgtcagaccttcc
aatggtgatccgcttagatcattaatccaggatcatattgtcagtgcagcacttctgaca
aaaaaggatactttcttaaaccgtgacgagttctgtcagcttctatatagttctggtgtt
tccagtagtgggctaggttctttcactggcaagccaggccagagagtattaatttcaaga
tcagaacaagaggtgttgccccttcttcctgcaatatggaagccagagcctctttggaca
ggaaagcaggtcattactgctgtgctgaatcatattaccagggggcgcccaccatttatt
gttgaaagaggtggaaaactcccacaagacttttttaagacgagatttaacgcagataaa
cagagtggtagaaagaagaatgataaaggaaaattgagcaaaacaaataagatgcacaaa
gataaatcaggcaaaaaaaaagaggttgttgaaggtaaacccggtgaagaaaaggaggct
gaaaagaataaatcaaaggaaaaggagcttagtgaagaaaagcttttgatctacaaaaat
gatttggtgcggggtgtaattgacaaggctcagtttgctgactatggcttggttcataca
gttcaggagctctatggctccaatactgcaggcactctgctttctgcattgagccgttta
tttactgtttttctgcagatgcatggctttacgtgtggagtggacgatcttttgatattg
aaagataaagagagagaaaggaagaatcatcttcacggttctgaagagattggcaaaaga
gttcatcttgaagctcttgagcttgaggatggtgctgagatagaccctataaaattgaaa
tcagaaatcgagaaggctatgcgtggtggtggagatgctgctgtggcatactttgatatg
aagatgacaagtcaactcaataagcacacaagctcttctgtcattaatgatttgttatct
gagggattactaaagcctactggaaagaactggatttcccttatgacaacatctggggct
aaaggtagcaaggttaatttccagcaaatatcttctcatttgggtcaacaagaactagaa
ggcaaacgtgtcccacggatggtttctggaaagacattacccagttttcatccatgggat
tgggccccacgtgccgggggctttataattgatcgattccttactggccttcgccctcaa
gaatattacttccattgcatggccggccgtgaaggattggtcgatacagcagtcaaaaca
tctcgcagtggataccttcaaagatgcctcataaaaaatcttgaatgcctgaaaatcagc
tatgattatagcgtccgtgatgctgatggttctattgttcaattttgctatggagaagat
ggagtggatgttcatcaaacaagctttatctcaaaatttgatgcactggcagcaaatcaa
gagatgatttacaaaaaatgcagtggtcagcttgatgcatccaatgcttatatcatggaa
ttgccagatgcactaaaggacaatgctgagaagttcgcagataaattcctctcaaatgag
atggcaaaacaagacttcttgaaattagtgaagcacaagtttgtattaagtcttgctcag
ccaggagaaccagttggcctgcttgctgctcagtctgtgggagaaccttcaacccagatg
acattgaatacatttcatcttgctgggcgaggtgaaatgaatgtcacccttggaattcca
cggctacaagaaatcctgaccattgcttcaaaggatattaagactccagttattacatgc
cccttgctagtagggaaaacagaggatgatgccaagcgtcttgctgacaagttaaagaaa
atcacagttgcagatatagtgaagaaaattagtgtaaaagtaagagcgtttacttctcat
gatggccaggcttgtactgtttatgtgcttacaatggagctttacaaacctaaaaactat
cctacatacactgatatcactttggaagactgggaggaaatattagaggttgtattcgtc
agggagttggaggatactatacagaatcatttgcttttgctctccaagattaacggcata
aaaaatgttgcatcagggttaacacaaaaggcttcaaatgagacggatcaagaaggttca
ggcaatgtttcacaatgtaggggagacgatgatgatgcagacgatgcagatggtgaagag
gctgaggatcttggcatggacgcacacaagcaaaaacaacgagctacagatgagaaggac
tatgaggatggttctgaaggggaaatgaatgatggggtttcagcggctggattcgggagt
gaaattgatcaggctgagagtgagattgatgatgatcaggcagaaactgagattgaagat
gatcgggctacaaatgagattgagaatagccaggatcaagcctctgaaaatctaaaaccc
tttacaccaaagtcaagcaagaaaaagtccaagtcaaaaaccaaacggaagaaggccaga
gcaaaattagttaagaaggacacggatagagcaatctatgtggctgcaagggggatgcac
tttgaggctcatttcaaatttattaatgaacctaatatcttactggctcagattgctcgg
catgtggcaaagaaggtttacatccaaagctctggaaagattgatcagtgtcaagtgact
aactgcaaagaaagtcaggtgatttactatggaaaagatcccaagaagagggaagatatt
aagcctgaagaaaaagaaaaggtccaggcactgcatacaacaggagttgattttcatgcg
ttttggcaattgcaagattttattgatgtcaggtacatttattccaacaacattcaagcc
atgctagaaacatatggtgtggaagccgccagagaaaccatcatcagggagataaagcat
gtgtttggttcttatggaatatctgtcaataccagacacttatctctgattgctgacttt
atgacccattcgggtgggtatcgtccaatgagccgacttgggggcatagcagaatcagta
tcacctttcagtaaaatgacttttgagacagcatccaagttcattgttgaagcagcatct
tatgggcaggtggacaagttggacactccatctgctcggatttgtctagggttgccagta
aagatgggcactggatcttttgatttgatgcagaaattggaggtttaa

DBGET integrated database retrieval system