Citrobacter sp. XT1-2-2: M4I31_10795
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Entry
M4I31_10795 CDS
T09034
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
cix
Citrobacter sp. XT1-2-2
Pathway
cix02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
cix00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
M4I31_10795 (pdeR)
Enzymes [BR:
cix01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
M4I31_10795 (pdeR)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_8
PAS_4
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
UQX61379
LinkDB
All DBs
Position
complement(2274743..2276734)
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AA seq
663 aa
AA seq
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MKDVRERVTLYSYVGTHNPYWRLSEDCNILHFSIDEASAVDQTVELSAEQADRIREMTVI
TSSLLMTLPIEDDDIPVHLVGRKINKREWAGSASAWDDTPSVARDLAHGLSFAEQVVSEA
NSVIVILDRMGNIQRFNRLCEEYTGLKEREVIGQSVFTLFMSRREAAASRRNIEVFFREG
NSYEVERWVKTCKGQRLFLFRNKFVHNGSGKNEIFLICSGTDITEERRAQERLRVLANTD
SITGLPNRNAIHELISNAIENAGDTQVGIVYLDLDNFKKVNDAYGHMFGDQLLQSVSLAI
LSCLDDNQLLARFGGDEFIVLATETSQGALEATASRILTRLRQPFRIGLIEVYTGCSIGI
SLAPQHGQDGESVIRNADTAMYTAKEGGRGQFCVFSPEMNQRVFEYLWLDTNLRKALEND
QLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLEFISYAEESGLIVPLGRWVILDVV
RQVAKWRAKGINLRVAVNVSARQLADQTLFTALKQVLHDLNFEYCPIDVELTESSLIENE
QLALSVIQQFSQLGAQIHLDDFGTGYSSLSQLARFPLDAIKLDQTFVRDVHKQPISQSLV
RAIVAVAQALNLQVIAEGVESAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYRRHLNK
KTR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacgtccgggagcgggttacgttgtatagctatgtgggcactcataacccctac
tggcgtttgtcagaggattgcaacatcctgcatttctctatcgacgaagcgtcagcagtc
gatcagaccgtcgaattgtcagctgagcaagccgaccgcattcgcgaaatgacggtgatt
acatcgagcctgttgatgacgcttcccattgaagatgacgacatacccgtgcatctggtc
ggcaggaaaatcaataagcgcgaatgggcgggaagcgcatccgcctgggatgacacccct
tccgtcgcgcgcgacctggctcacggcctctctttcgctgagcaggtcgtttctgaagct
aactccgtcattgtcattcttgaccgtatgggcaacattcaacgttttaatcgcctgtgc
gaagagtacaccggtctcaaagagcgcgaagtgattggccaaagcgttttcacgctgttt
atgagccggcgcgaggccgcagcctcacggcgcaacattgaggtgttttttcgcgaaggt
aactcttatgaggtcgaacgttgggttaaaacctgcaaaggccagcgtctgtttctgttc
cgcaataagtttgtgcataacggtagcggcaagaacgaaatatttctgatctgttccggt
accgatattactgaagagcgccgcgcgcaggaacgtctacgggtattggccaataccgac
tccatcactggtttaccgaaccgcaacgcaattcacgagctgatcagcaacgccattgaa
aacgcgggcgatacgcaggttgggattgtctatctcgatttggataactttaaaaaggtg
aacgacgcctacggtcatatgtttggcgatcagttgttacaaagcgtgtcgctggctatc
ctcagttgcctcgacgacaaccagctactggccaggtttggcggtgatgaattcattgtc
cttgccaccgaaacgtcccagggtgcgctggaggctacggcatcgcgtatcctgacgcgc
ctgcgtcaaccttttcgcattggactgatagaagtctataccggatgttcaatcggtatt
tctctcgcgccacagcatggacaggacggcgagagcgtcatccgtaacgcggatacggcc
atgtacacagcaaaagaaggcggtcgtggtcagttttgcgtcttctcaccggaaatgaat
caacgagtttttgaatatttgtggttggataccaatctgcgtaaggcgctggaaaacgat
caactggttatccactatcagccaaaaataacctggcgcggagaagttcgtagtctggag
gctctggttcgttggcagtccccggaacgtggcctcataccgccgttggagtttatctcc
tacgccgaagaatcagggctcatcgttccgctcggtcgatgggttattctggacgtcgtg
cgccaggtggcaaaatggcgtgccaaggggataaatctacgcgtggcggtaaacgtgtct
gcgcgccagctcgccgaccagacgctatttaccgctctcaagcaggtgcttcacgatctc
aactttgaatactgcccgatcgatgttgaattaacggaaagcagtttgattgaaaatgag
cagttggcgctatccgtcattcagcaatttagtcagttgggggcacaaatccatttggat
gattttggcaccggttattcgtcgctatctcaactggcccgcttcccgcttgatgcgata
aaactggatcaaacctttgtcagagatgtgcacaagcaacctatttcgcagtcgctggtg
cgggccattgtcgcggtcgcgcaagcgctcaacctgcaggtcatcgccgaaggcgttgaa
agtgcaaaagaggatgcgtttttgaccaagaacggcgtcaatgagcgtcagggattttta
ttcgccaagccgatgcctgcagttgcgttcgaacgatggtatcgacgacacctgaataaa
aaaacgcgataa
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