Callithrix jacchus (white-tufted-ear marmoset): 100389642
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Entry
100389642 CDS
T03264
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03020
RNA polymerase
cjc03420
Nucleotide excision repair
cjc05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100389642 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
100389642 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
100389642 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjc03021
]
100389642 (POLR2A)
03400 DNA repair and recombination proteins [BR:
cjc03400
]
100389642 (POLR2A)
Enzymes [BR:
cjc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100389642 (POLR2A)
Transcription machinery [BR:
cjc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100389642 (POLR2A)
DNA repair and recombination proteins [BR:
cjc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100389642 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
100389642
NCBI-ProteinID:
XP_035155768
Ensembl:
ENSCJAG00000015157
LinkDB
All DBs
Position
5:70120744..70153445
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggtggccccccctcgggggacagcgcatgcccgctgcgcaccatcaagaga
gtgcagttcggagtcctgagcccggatgaactgaagcgaatgtctgtgacggagggtggt
atcaaatacccagagacgactgagggaggccgccccaagcttggggggctgatggatcca
agacagggggtgattgagcggactggccgctgccaaacatgtgcaggaaacatgacagag
tgtcctggccactttggccacattgaactggccaagcctgtgtttcacgtgggcttcctg
gtgaagacaatgaaagttttgcgctgtgtctgcttcttctgctccaaactgcttgtggac
tctaacaacccaaagatcaaggacatcctggccaagtccaagggacagcccaagaagcgg
ctcacacatgtctacgacctttgcaagggcaaaaacatctgcgagggtggggaggagatg
gacaacaagttcggtgtggaacagcctgagggtgacgaggatctgaccaaagagaagggc
catggtggctgtgggcggtaccagcccaggatccgacgttctggcctggagctgtatgcg
gaatggaagcacgttaatgaggactctcaggagaagaagatcctgctgagtccagagaga
gtgcatgagatcttcaaacgcatctcagatgaggagtgttttgtgctgggcatggagccc
cgctatgcgcggccagagtggatgatcgtcacggtgctgcctgtgcccccactctccgtt
cggcctgctgttgtgatgcagggctctgcccgcaaccaggatgacctgactcacaaactg
gctgacattgtgaagatcaacaatcagctgcggcgcaacgagcagaatggtgcagcggcc
cacgtcattgcagaggatgtgaagctcctccagttccatgtggccaccatggtggacaac
gagctgcctggccttccccgtgccatgcagaagtctgggcgtcccctcaagtccctgaag
cagcggttgaagggcaaggaaggccgggtgcgggggaacctgatgggcaaacgagtggac
ttctcggcccgtactgtcatcacccctgaccccaacctctccattgaccaggttggcgtg
ccccgctccattgccgccaacatgacctttgcggagattgtcacccccttcaacattgac
agacttcaagaattagtgcgcagggggaacagccagtacccaggggccaagtacatcatc
cgagacaatggcgatcggattgacttgcgttttcaccccaagcccagtgaccttcatctg
cagaccggctataaggtggaacggcacatgtgtgatggggacattgttatcttcaaccgg
cagccgactctgcacaagatgtccatgatggggcatcgggtccgcattctcccctggtcc
accttccgcttgaatcttagtgtgacaactccatacaatgcagactttgatggagatgag
atgaacttgcacttgccacagtctctggaaacacgggcagagatccaggagctggccatg
gttcctcgaatgattgtcacgccccagagcaatcggcctgtcatgggtatcgtgcaggac
acactgacagcagtgcgcaaattcaccaagagagatgtcttcctggagcggggtgaggtg
atgaacctcctgatgttcctgtcgacatgggatgggaaggtcccacagccagccatccta
aagccccggcccctgtggacaggcaagcagatcttctccctcatcatacctggccacatc
aattgtatccgcacccacagcacccatcctgatgacgaagacagtggcccttacaagcac
atttctcctggggacaccaaggtggtggtggagaatggagagctaatcatgggcatcctg
tgtaagaagtctctgggcacgtcagctggctccctggtccacatctcctacctagagatg
ggtcatgacatcactcgcctcttctactccaacattcagactgtcattaacaactggctc
ctcatcgagggtcataccattggcattggggactccattgctgattctaagacttaccag
gacattcagaacactattaagaaggccaagcaggatgtaatagaggtcattgagaaggca
cataacaatgagctggagcccaccccagggaacactctgcggcagacttttgagaatcag
gtgaaccgcattcttaatgatgcccgagacaagactggctcctctgctcagaaatcttta
tctgaatacaacaacttcaagtctatggttgtgtccggagctaaaggttccaagattaac
atctcccaggtcattgctgtcgtcgggcagcagaacgtggagggcaagcggattccattt
ggcttcaagcaccggactctgcctcacttcatcaaagatgactatgggcctgagagccgt
ggctttgtggagaactcctacctagccggccttacacctaccgagttcttcttccatgcc
atggggggtcgtgaggggctcattgacacggctgttaagactgctgagactggatacatc
cagcggcggctgatcaagtccatggagtcagtgatggtgaaatacgatgcaactgtgcgg
aactccatcaaccaggtggtgcagctgcgatacggtgaagatggcctggcgggcgagagc
gttgagtttcagaacctggctacacttaagccttccaacaaggcttttgagaagaagttc
cgctttgattataccaatgagagggccctgcggcgcacactgcaggaggacctggtgaag
gatgtgctgagcaatgcgcatatacagaatgaattggagcgggaatttgagcggatgcgg
gaggatcgggaggttctcagggtcatcttcccaactggagacagcaaggtcgttctcccc
tgtaacctgctgcgcatgatctggaatgctcagaaaatcttccacatcaacccccgcctt
ccctctgacctgcaccccatcaaagtggtagagggagtcaaggaattgagcaagaagctg
gtgatcgtgaatggggatgacccactaagccggcaggcccaggaaaatgccacgctgctc
ttcaacatccacctgcgatccacgttgtgttcccgccgcatggcggaggagtttcggctc
agtggagaggcctttgactggctgcttggggagattgagtccaagttcaaccaagccatt
gcccatcctggcgaaatggtgggagctctggctgcacagtcccttggagaacctgctacc
cagatgaccttgaacaccttccactatgctggtgtgtctgcgaagaatgtgacgctgggt
gtgccccgacttaaggagctcatcaacatttccaagaagccaaagaccccttcgcttact
gttttcctgttgggccagtctgctcgagatgctgagagagccaaggatattctgtgccgc
ctggagcatacaacattgaggaaggtgactgccaacacagccatctactatgaccccaac
ccccagagcacagtggtggcagaggatcaggagtgggtgaatgtctactacgagatgcct
gactttgatgtggcccgaatctctccctggctgttgcgggtggagctggatcggaagcac
atgactgaccggaagctgaccatggagcagattgccgagaagatcaatgctggttttggc
gacgacttgaattgcatctttaatgatgacaatgcagagaagctggtgcttcgtattcgc
atcatgaacagtgatgagaacaagatgcaagaggaggaagaggtggtggacaaaatggat
gatgacgtcttcctgcgctgcatcgagtccaacatgctgacagatatgaccctgcagggc
attgagcagatcagcaaggtgtacatgcacttgccacagacagacaacaagaagaagatc
atcatcacggaggatggggagttcaaggccctgcaggagtggatcctggagacggatggc
gtgagcttgatgcgggtgctgagtgagaaggatgtggaccccgtgcgcaccacatccaat
gacatcgtggagatcttcacggtactgggcattgaagccgtgcggaaggccctagagcgg
gagctgtaccatgtcatctctttcgatggctcctatgtcaattaccgacacttggctctc
ttatgtgataccatgacctgtcgcggccacttgatggccatcacccgacacggagtcaac
cgccaggacacaggaccactcatgaagtgttcctttgaggaaacggtggacgtgcttatg
gaagcagccgcacatggtgagagcgaccccatgaagggggtctctgagaatatcatgctg
ggccagctggctccggccggcactggctgctttgacctcctgcttgatgcagagaagtgc
aagtatggcatggagatccccaccaatatccccggcctgggggctgctggacccactggc
atgttctttgggtcagcacccagtcccatgggtggaatctctcctgccatgacgccttgg
aaccagggtgcaacccctgcctacggcgcctggtcccccagtgttgggagtggcatgacc
ccaggggcagctggcttctctcccagtgctgcatctgatgccagcggcttcagcccgggt
tactcccctgcctggtctcccacaccaggctccccaggctccccaggtccctcaagcccc
tacatcccttcaccaggtggtgccatgtctcccagctactcaccaacgtcacctgcctac
gagccccgctctcctgggggctacacaccccagagtccctcttactcccccacttccccc
tcctactctcccacttctccatcctattctccaaccagtcccaactatagccccacatca
cccagctactccccaacatcacccagctactcaccgacctctcccagctattcgcccacc
tctcccagctactcacccacctctcccagctattctcccacctctcccagctactcaccc
acttcccctagctattcgcccacctctcccagctactcgcccacctctcccagctactcg
ccgacatctcccagctactcaccaacttcacccagctattctcccacttcccccagctac
tcaccgacctctccaagctattcacctacctctcccagctactcacccacttctccaagt
tactcacccaccagcccgaactattctccaaccagtcccaattacaccccaacatcaccc
agctacagcccaacatcacccagctattcacctaccagtcccaactacacacctaccagc
cctaactacagcccaacctctccaagctactccccaacgtcacccagctactccccaacc
tcaccaagttattccccttccagcccacgatacacaccacagtctccaacctatacccca
agctcacccagctacagccccagctcgcccagctatagcccaacctcacccaagtacacc
ccaactagtccttcctacagtcccagctccccagaatataccccaacttctcccaagtac
tcgcctaccagtcccaaatactcacccacctctcccaagtactcacctaccagccccacc
tattcacccactaccccgaaatactccccaacttcccctacttattccccaacctctcct
gtctacaccccgacttcccccaagtactcacctactagccccacttactcacccacttcc
cctaagtattcaccgaccagccccacctactcgcccacctccccgaaaggctctacctac
tctcctacttcccctggctactcacccaccagccccacctacagcctcaccagcccggcc
atcagtcctgatgacagtgacgaggagaactga
DBGET
integrated database retrieval system
