Callithrix jacchus (white-tufted-ear marmoset): 100408689
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Entry
100408689 CDS
T03264
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100408689 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjc03021
]
100408689 (POLR1A)
Enzymes [BR:
cjc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100408689 (POLR1A)
Transcription machinery [BR:
cjc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
100408689 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
FAM60A
Motif
Other DBs
NCBI-GeneID:
100408689
NCBI-ProteinID:
XP_002757589
Ensembl:
ENSCJAG00000019547
UniProt:
F7H346
LinkDB
All DBs
Position
14:24929544..25007841
Genome browser
AA seq
1720 aa
AA seq
DB search
MLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRFLDSLGNPSANGLYDLALGPADS
KEVCSTCAQDFNNCSGHLGHIELPLMVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLL
LCQLRVLEVGALQAVYELERILNRFLEENADPSASEIQEELEQYTTEIVQNNLLGSQGSH
VKNVCESRSKIIAFFWKTHMNPKRCPHCKTGRSVVRKEHNSKLTITFPATVHRTAGQKDS
EPLGIEEAQMGKRGYLTPTSAREHLFALWKNEGFFLNYLFSGVDNDGMESRFNPSVFFLD
FLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPGDVAVPLT
DEGKDSLITIDRAFLSTIPGQSFIDKLYNIWIRLQSHVNIVFDSEMDKLMTDKYPGIRQI
LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL
RQAVINGPNVHPGASMVINEDGSRTALSAVDVSQREAVAKQLLTPAMGAPKPQGTKIVCR
HVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYRG
LTDKLGRVKLFPPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLTGKAKITGKAWVKET
PQSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGEISGKVLTC
LARLFTAYLQLYRGFTLGVEDILVKLKADVKRQQIIEESIHCGLRAVRAALNLPEAASYD
EVREKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQS
GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIK
PPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYG
EDGLDVPKTQFLQPKQFPFLASNYKAIMKSNHLHEVLSRADPKKALRHFRAIKKWQSKHP
NTLLRRGAFLNYSQKIQTAVKALNLESGNRNGRSLGTQEMLRMWYELDEHSRRKYQKKAA
SCPDPSLSVWRPDIHFASVSETFETKVDDYSQEWAAQTERSYEKSELSLDRLRTLLQLKW
QRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIK
TPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESLCIEEKQNKFRVYQLRFQ
FLPHACYQQEKCLRPEDILHFMETRFFKLLMESIRKKNNKASAFRNVNTRRATQRDLDNA
EESGRSRGEQEGDEEEEGHIVDAEADEGDTDASDAKRKEKQEEEVDYESEEEEEKEGEEN
DDEDTQEEGNAHGEGAQETQEQDEEMASGAEEAPSLPALLTQPRKSTHSQEPQGAEASKH
RVQAVREIHSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAHDAIVYTTKGIT
RCLLNETTNSKNEKELVLNTEGINLPELFKYAEILDLHRLYSNDIHAMANTYGIEAALRV
IEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSNSSPLQQMTFETSFQF
LKQATMLGSHDELRSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5163 nt
NT seq
+upstream
nt +downstream
nt
atgttgatctccaagaacatgccctggcggcggctgcagggcatttccttcgggatgtat
tcggctgaagagctcaagaaattaagtgttaaatccattacaaaccctcggttcctggac
agcctggggaacccatcggcaaacggcctgtatgatttagctttgggccccgcagattcc
aaagaggtgtgctccacctgcgcgcaggacttcaacaactgctccgggcacctgggccat
attgagctcccactcatggtgtacaaccctctcctcttcgataagctatacctgctgctt
cggggctcttgtttaaactgccacatgctgacttgtccccgggctgtgattcacctctta
ctctgccagctgagagttctggaagtcggggccctacaagcagtctacgagcttgagaga
attctgaacaggtttctggaagaaaatgctgatccctctgcctctgaaattcaggaggaa
ttagaacaatacacaactgaaattgtgcagaacaacctcctggggtcccagggctcacat
gtaaagaatgtgtgtgagagcaggagcaagataattgctttcttctggaagacacacatg
aatcctaagcgctgtccccactgcaagactgggcgatctgttgtccgaaaggaacacaat
agcaagttgacgatcacgtttccagccacggtgcacaggacagctggccagaaggactcc
gagcccctaggaattgaggaagctcagatgggaaaacgaggatacttaacacccaccagt
gcccgtgaacacctttttgccctgtggaagaatgaaggattctttctgaactaccttttt
tcgggagtggacaatgatggtatggagtccagattcaaccccagtgtgttctttctagat
ttcttggtggtgccgccctcaaggtatcgcccagtcagtcgcttgggagaccaaatgttt
accaatggccagacggtgaacttgcaggctgtcatgaaggatgtagttctgattcgaaaa
cttctggcattgatggcccaagaacagaagctaccaggggatgtggcagtaccccttaca
gatgagggaaaagactctttgattactattgacagagcctttctgagtacaattccaggg
cagtccttcatagacaaactttacaacatttggattcgccttcagagccacgtcaatatt
gtgtttgatagcgagatggacaagctaatgacagacaagtacccaggcattaggcagatc
ctggagaagaaagaaggcctgttccgaaagcacatgatgggaaagcgagtggactatgct
gcacgctcagtcatctgcccagacatgtacatcaacaccaacgaaattggaattcccatg
gtatttgccacaaaactgacctacccgcagccagttactccgtggaatgttcaggaactt
agacaggcagtcatcaatggccccaacgtgcacccaggagcctccatggtcatcaatgag
gatggcagccgcacagccctgagtgctgtggatgtgagccaacgagaggctgtggccaag
cagctcctgactccagccatgggggcacctaagccccagggaacaaaaattgtgtgccgg
catgtgaagaatggggacattctgctactgaaccgccagcccaccctgcacagaccctcc
atccaggcccaccacgcccgcatcctgcctgaagagaaagtgctgcggctccactatgcc
aactgcaaagcctataatgccgactttgatggagatgagatgaatgcccatttcccccag
agtgagctgggccgggccgaggcctatgtcctggcctgcaccgatcagcagtaccttgtt
cccaaggatggccaaccattggcgggactgatccaggatcacatggtttcaggtgcaagc
atgactactcggggttgctttttcacccgggagcagtatatggagctggtgtaccgagga
ctcacagacaaactggggcgcgtgaagctctttcctccctctatcctgaagccctttcca
ctgtggacaggaaaacaggttgtgtcaacactgctcataaatataatcccagaggaccac
atcccactgaacttaactggaaaggcaaaaatcactgggaaagcctgggtgaaggagact
cctcaatctgttcctggctttaaccccgactcgatgtgcgagtcccaggtgatcatcagg
gaaggggagctgctctgcggagttctggacaaggcgcactacgggagctccgcctatggc
ctggtccactgctgctatgagatctacgggggcgagatcagcggcaaggttctaacctgc
ctggctcgcctcttcactgcctacctgcagctctacagaggcttcaccttgggcgtggaa
gacattttggtgaagctgaaggcagatgtgaagaggcagcagatcattgaagaatccatc
cactgtgggctccgggctgtcagggctgcattaaatctgccagaagccgcatcatatgat
gaggtccgagaaaaatggcaggatgcccatctgggcaaggaccagagggattttaacatg
attgatctgaagttcaaggaggaagtgaaccattacagcaatgagattaacaaggcatgc
atgccttttggtctacacagacagttcccagagaacagcctgcagatgatggtgcaatcg
ggagccaaaggttcaactgtgaacacgatgcagatctcatgcctgctgggccagattgaa
ttggaaggtcggagacccccgctgatggcatctggcaaatcactgccctgctttgagcct
tatgagttcacccccagggctggtggttttgtcactggcagattcctcaccggcatcaaa
cctcctgagttcttcttccactgcatggcaggacgagagggcctggtcgacactgctgtg
aaaactagccgctcaggctatctccagaggtgcatcattaaacacctggaggggctggtc
gtgcagtatgatctcacagtccgagacagtgatggcagtgtggtacagttcctgtatggg
gaggatggcctggacgtccccaagacacagttcctgcagcccaagcagttccccttcctg
gccagcaactacaaggcgataatgaaatcaaatcatctccatgaagttttatccagagct
gatcccaaaaaagctctccgccacttcagagccatcaaaaaatggcaaagcaagcacccc
aacaccctcctgagaagaggcgccttcttgaattattcccagaaaattcagacagctgtg
aaagcgctgaaccttgagagtggaaaccggaacggccgcagcctggggacccaggagatg
ctgaggatgtggtatgagttggatgagcacagccgaaggaaataccagaagaaggcggcc
agttgtcctgaccccagtctgtctgtctggcgccctgacatacactttgcatcagtgtca
gaaacatttgaaacaaaggttgatgactacagtcaagagtgggcagctcaaacagagagg
agttatgagaaatctgagctttctctcgacaggttgaggaccttgctgcagctgaagtgg
cagcgctcactgtgtgagccaggtgaggccgtgggcctgctggccgcccagagcatcgga
gagccctccacccagatgaccctcaacaccttccactttgcaggcagaggcgagatgaac
gtcaccctgggcattccaaggttgcgggagattctcatggtggccagcgccaacatcaag
acacccatgatgagtgtgcctgtgctcaacaccaagaaagccctgaagagagtgaaaagc
ctgaagaagcaactcaccagagtgtgcttaggggaggtattgcagaaaattgacgtccag
gagtccttatgtatagaagaaaaacagaacaaattccgggtgtaccagctgcggtttcag
tttctgccacatgcgtgttaccagcaggagaagtgcctgagacctgaggacatcctgcac
ttcatggaaacaagattctttaaacttctgatggaatccatcagaaagaagaataataaa
gcatcagctttcaggaacgtaaacactcgaagagctacgcagcgggatctggacaatgct
gaggagtccgggaggagtcggggagagcaggagggcgatgaggaagaggaggggcacatt
gtggacgctgaagctgatgagggggacaccgatgcctctgatgccaaacgcaaggagaag
caggaggaggaggttgattatgagagtgaggaagaggaggagaaggaaggcgaggagaat
gatgatgaggacacgcaggaggaagggaacgcccacggggaaggtgctcaagagacccaa
gagcaagacgaagagatggcttcaggcgctgaggaggccccgtccctgcccgccctcctg
acacagccccggaaatccacccacagccaggagccccagggggccgaggcctcgaagcac
cgggtccaggctgtgcgtgagatccactccttcatagaggactaccagtatgacaccgag
gagagcctgtggtgccaggtgacagtgaagctccctctgatgaagatcaattttgacatg
agctccctggtagtatctttggcccatgatgccattgtctatacaaccaagggcatcact
cggtgcctcctgaatgaaacgaccaacagtaagaacgagaaggagcttgtgctaaacaca
gagggaatcaacctcccggagctgttcaagtatgcggagatcctggatctgcaccgcctc
tattccaatgatatccacgccatggccaacacgtatggcatcgaggctgcactgcgggtg
attgagaaggaaatcaaggatgtctttgccgtgtatggcattgcagtcgaccctcgccat
ctctccctggtcgctgattatatgtgcttcgagggtgtttacaagccactgaatcgcttt
gggatccagtcaaactcttccccgctacagcagatgacatttgaaaccagcttccagttt
ctgaagcaggccaccatgctgggatcccatgatgagctgaggtctccttctgcctgcctt
gtggttgggaaggtcgtcaagggtgggacaggcctgttcgagctcaagcagcccctgaga
tag
DBGET
integrated database retrieval system
