Caldicellulosiruptor kronotskyensis: Calkro_0907
Help
Entry
Calkro_0907 CDS
T01357
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
ckn
Caldicellulosiruptor kronotskyensis
Pathway
ckn03030
DNA replication
ckn03430
Mismatch repair
ckn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ckn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Calkro_0907
03430 Mismatch repair
Calkro_0907
03440 Homologous recombination
Calkro_0907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ckn03032
]
Calkro_0907
03400 DNA repair and recombination proteins [BR:
ckn03400
]
Calkro_0907
Enzymes [BR:
ckn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Calkro_0907
DNA replication proteins [BR:
ckn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Calkro_0907
DNA repair and recombination proteins [BR:
ckn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Calkro_0907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
Rv2179c-like
RNase_H_2
DEDDh_C
HHH_3
DUF655
DNA_pol_A_exo1
T2SSK
RecG_wedge
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ADQ45779
UniProt:
E4SDH0
LinkDB
All DBs
Position
1085195..1089403
Genome browser
AA seq
1402 aa
AA seq
DB search
MSETLFLPVKPVKIEFDKSSKDLKVYVESLDSLQGTDLIGIEQRFKSLLESCRDVEIKLF
KTRNLTLEELLKKYRWFLFYKISKRCNGLSHFLRECEIVPSSNGLDFLVPNGIRDILFER
KVDVLVKQILSEEFGIVCDVDFKIKDFFIQFDTDQEVEKYLMFFEEKKEETEKITTEKSG
VETDPTIIFGKKIDEKKEVIPISLIKVGTDCVIEGEIFNLEIKETKNQNVLIYKLYITDY
LNSTFVKIVAKKDKIPTSISVGDYVKVEGRVEFDDFEKAVVVNAKNINKSQKPQRLDTSN
NKRVELHAHTKMSAMDAVCSAEELIKLAASMGHRAVAITDHGVVQAFPEAQEASKNCNIK
VIYGMECYLIDDGAPVVYNPKEGQGFDSTFVVVDIETTGFDSQRDKIIEIGAVKIENGQI
IERFSTFVDPEGKIPVRISELTGIYQDMVDKAPKLNDAILEFEKFASGSILVAHNAQFDI
GFLKKAYHECGIIFDYTYIDTLELSRRLLTDLSSHKLNKVAEFLNVELKHHHRADSDAET
TAGIFTSLLEKLKLRGYKWLKELNSIESNTKADLKSHSYHATILVKNQQGLKNLYKLVSY
SHLEYFYKRPRIPKSLLIQLKDGLLIGSACESGEIFRAFLEGKSEEEIEKIAAFYDFLEI
MPVENNSFLIREGYLKDEEDLREINRKIYNLGKKLGKLVVATSDAHYCHPHQRILRQILK
HNQGYDDVENDPLLYFRTTDEMLKEFEYLGSDSCYEVVVENTNKIADMIEDVKPIPDETF
PPKIEGAEEEIYNMTMKKAHEIYGDPLPEIVRARLEKELNSIIKNGFAVMYLIAQKLVSK
SLSDGYLVGSRGSVGSSLVATMCGITEVNPLPPHYICPNCKYSEFITDGSVGCGYDLEDK
NCPRCGEKLKKDGHDIPFETFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRA
GTISTVAEKTAHGFVTKYAEEKGLNLHPAEVLRLSQGCTGVKRTTGQHPGGLMIVPRDKE
IFDFTPIQHPADSTDKSVITTHFDYHAISGRLLKLDILGHDDPTVIRMLQDLTGVDPRSI
PLDDKATMSIFTSTEALGISPEDIDCEVGTFGIPEFGTRFVRQMLIETKPKTFAELVRIS
GLSHGTNVWTNNAQDLVRNGIATLKEVISTRDDIMLYLIQKGVPPKDSFRIMEDVRKGKG
LKPEDEQLLRAHNVPDWYIESCKKITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYF
TVRADDFDYATILKGRDAIRQKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPV
DLNESDAEKFIIKDGGLLIPFNALPNVGVAAAKSIVEARKEGRFLSVDDLIRRAKLNKQV
IEILTQYKVLKDLPQTSQLSFF
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagactctatttttgccagtaaagcctgtcaagattgagtttgataaatcaagt
aaggaccttaaagtttatgtggaaagccttgatagtcttcaaggtacagaccttattggc
attgaacaaaggtttaagtctcttttagaaagttgcagggatgttgagataaaacttttc
aaaaccagaaacctgacgttggaagaacttttgaagaaatatagatggtttttattttat
aagatttcaaaaagatgtaacggtcttagtcattttttgagagaatgtgagattgtgcca
agttcaaacggcttagattttctggttccaaatggtataagagatatcctttttgaaaga
aaggtagatgtacttgtaaagcaaatactgtctgaagagttcggaatagtatgcgacgtg
gattttaagattaaagacttttttatccagtttgacacagaccaagaagtagaaaaatat
ctaatgtttttcgaggaaaagaaagaagaaactgagaaaattacaactgaaaagagtggg
gttgagacagacccgaccattatatttggcaaaaagatagatgaaaagaaagaggtaatt
cctatttctcttatcaaagttggtactgattgtgtgattgaaggtgaaatttttaatctt
gagataaaagagactaaaaaccagaatgtgctcatatacaagctttacatcacagactat
ttaaattcaacctttgtaaaaattgttgccaagaaagataaaattcctacttcaatttct
gttggagattatgttaaggttgaaggcagggtagaatttgacgattttgaaaaagcggtt
gtggtgaatgctaaaaacataaacaaaagtcaaaaacctcagcgacttgatacaagcaat
aacaagagagtagaacttcatgctcatactaaaatgtcagctatggatgctgtgtgctct
gcagaagaattaataaaattggcagcttcaatgggacaccgagcagttgcaataacagac
catggagttgttcaagcgtttccagaagcacaagaggcaagtaaaaattgtaatattaaa
gtaatatatgggatggaatgttatcttattgatgatggtgcgccagttgtttacaatcct
aaggaaggacaaggatttgactctacctttgtggttgttgacattgaaacaacagggttt
gacagtcaaagagataaaataatagaaattggtgctgtgaaaatagaaaacggtcaaata
atagagagattttctacatttgttgaccccgaaggcaaaatccctgttaggatctcagag
ctaacaggcatataccaagatatggttgataaagccccaaagctgaatgatgccattttg
gagtttgaaaagtttgcgagcggaagtattcttgttgcacataatgctcaatttgacatt
ggatttttgaaaaaggcgtatcatgaatgtggaattatattcgactatacatatatcgat
acgctggaactttcaagaaggcttttgacagacctttcttctcataagttaaacaaagtt
gcagagtttttaaatgtagagttaaaacatcatcacagagctgattctgacgcagaaaca
acagctggtatctttacctctcttttagaaaagttaaaattaagaggatacaaatggtta
aaagaacttaattcaattgagtcaaacacaaaagcagacctcaaatctcacagctatcat
gcaaccatacttgtaaaaaatcaacagggtttaaaaaatctctacaaactggtatcatat
tctcatttagaatacttctacaaaaggccaaggatacccaaaagtcttttgatacaatta
aaagatggacttttgataggaagtgcatgtgagtctggtgaaattttcagggcctttttg
gaaggaaaaagtgaggaagagatagaaaagatagcagcattttatgatttccttgagata
atgccggttgagaataattcttttttgattagagaaggatatttaaaagatgaagaagat
ttaagagaaatcaataggaagatttacaatcttggcaaaaaacttggcaagcttgttgtt
gcgacatctgatgcgcactattgtcatccacaccaaagaatcttgcgccagattttgaaa
cataaccaaggatacgatgatgttgaaaatgacccattactttatttcagaacaacagat
gagatgctaaaagaatttgaatatcttggcagtgattcttgttatgaagttgttgtagaa
aataccaataagattgccgatatgatagaagatgtaaaaccaatacccgatgagactttt
ccacccaagattgagggcgctgaggaagaaatatacaatatgacaatgaagaaagctcac
gaaatatatggggaccctcttccggagattgtaagagcacggcttgaaaaggaactgaat
tcgataatcaagaatggttttgcagtaatgtatttgattgctcaaaagcttgtgtccaaa
tctttgtcagacggttatcttgttggttcgcgaggttctgttggttcttctcttgttgca
acaatgtgtgggataaccgaggtaaatccgttgcccccacattatatttgtccaaactgc
aagtattctgaatttataacagatggttctgttggatgtggttatgacttggaagacaaa
aactgtccacgctgtggggagaaacttaaaaaagatgggcacgacattccgtttgagacc
ttcttgggatttgatggtgacaaagaacctgatattgaccttaacttttctggtgattat
cagccaattgcgcacaagtttacagaagaactttttggacaaggttatgttttcagagct
ggtacaatctcaacagttgctgaaaagactgcgcacgggtttgtgacaaaatatgctgag
gaaaaaggtttgaatcttcatcctgcagaggttttaagactttctcagggctgcacagga
gtaaaaagaacaacaggccagcaccctgggggacttatgattgttccaagagacaaagaa
atatttgatttcacacctattcagcatccagcagatagcactgacaaaagtgttattaca
acgcactttgattatcatgcaatatcaggaagacttttaaaacttgatattcttggacac
gatgacccgactgttataagaatgctccaggacttaacaggagttgacccgcgctcaata
ccacttgacgataaggctaccatgtcaatttttacaagcacagaagctcttggaatttct
cctgaggacatagattgtgaagtagggactttcggtatacctgagtttgggacaaggttt
gtaagacagatgttaattgagacaaaaccaaagacgtttgctgagcttgttcgtatttca
ggtctttcgcacggtacaaatgtgtggacaaacaatgctcaggatttagtaagaaatgga
attgcaacgctcaaagaggtaatttctacaagggacgatattatgttatatttaattcaa
aagggtgttccaccaaaagacagtttcagaatcatggaagatgttagaaaaggtaaagga
ctaaaaccggaggatgagcaacttctaagagctcacaatgttccagactggtatatagag
agttgtaaaaagataacctacatgtttccaaaagcacatgctgcagcttatgtaatgatg
gcgttcaggattgcttatttcaaggtacattataaggaggcattctatgcaacatatttt
acagtcagagcagacgattttgattatgcaacaatcctcaagggaagagacgctataagg
caaaagataagagatttggaaaacaggataagtagtctttctcagaaagacaaaaacctt
ctgacagtgcttgagattgcaaatgagatgttagcacggggtttaaagttttaccctgtt
gatttgaacgagtctgatgctgagaagttcattataaaagatggagggcttttaataccc
tttaatgctctgccaaatgttggggtggcagctgcaaaaagcattgtggaggcgcgcaaa
gaaggaagatttttgtctgtggatgaccttataagacgtgcaaagctaaacaagcaggtt
atagagattttgactcagtataaagtgttaaaagacttgccacagacaagtcagctaagc
tttttctaa
DBGET
integrated database retrieval system
