Cyclopterus lumpus (lumpfish): 117737189
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Entry
117737189 CDS
T09199
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117737189 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clum03021
]
117737189 (polr1a)
Enzymes [BR:
clum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117737189 (polr1a)
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
117737189 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
HMG_box
Motif
Other DBs
NCBI-GeneID:
117737189
NCBI-ProteinID:
XP_034398832
Ensembl:
ENSCLMG00005008969
LinkDB
All DBs
Position
10:4224886..4250459
Genome browser
AA seq
1722 aa
AA seq
DB search
MLFGKDVPWRRLEGMSFGMYSTEEIRKLSVKAITNFRFLDSVGNVAPNSLYDLALGPADI
KEVCSTCCQDFNNCPGHLGHVELPLPVYNPLFFDKLYMFIRGSCLSCHMLTCPRSAIHLL
LNQLKLVDHGAMQEVYQLEQVLFQHLEENPKASGDEIGQTLKQFTDTTLGVNAEGSENTK
PIKHLVEKKNSLINDFWRIYMKCRKCPHCSSGRFTLRREHNSKLIITMPSVPLSMDTTND
DLMAGKRVYLTASTAREHMNKLWEQEGFFLKCLFAGMEAATTSREGEGGSYPDLFFLDLM
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGVVSKLLAIIAGEKTVPEDEQKEDEEQ
QQGVTTCPPLSLPQAPEQTDQTFLVAIPGVTLTDKLYNTWVRLQTHINIVFDSDMDKMIV
EKYPGIRQILEKKDGLFRKHMMGKRVDYAARSVICPDMYIETNEIGIPMVFATKLTYPQP
VTPWNVKELRQAVLNGPNIHPGASMVINEDGRKTILSADCLTQREAVAKQLLTPCPGPHK
MPMKIVNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGD
EMNAHFPQSELARAEAYTLVSTDQQYLVPKDGTPLAGLIQDHMVSGTRMTIRGCFFTRVQ
YIELVYRGLTDKPGRVTMLPPAILKPQPLWTGKQVVSTLLLNVIPQNAVPLNLAGKSKIP
SKAWIQVPPRAAPGYSPDSMCDSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGK
TSGKLLSCLARLFTAYLQLYRGFTLGVEDILVKAGANKQRKKIIQDSLQIGTKALQAAFN
LPATVDQGEAQSRWQDAHLNPDQKDFSMADHKFKEVANQVNNDINKVCMPVGLHTSFPDN
NLQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDPAPGAGGFVS
GRFLTGIKPQEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDG
SVVQFLYGEDGLDIPKTPFLQQKQFSFIEDNYKVIKRSQGLDEVLARLDPRAANRHFASI
QRWKAKREVACPRRGAFLLFSQKKLSKLKAAAEQIHPDVYGRNDAESQLMEMWRTLDGPS
RSKYSRKASRCPGPSLGLLKPDVCFGSVSETFHSITEKYLQNEGGRSRDAVDTHSLRRLL
LYKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVAS
SNIKTPMMSIPVLNTRKALKRAKTLRKRLTRVCLAEVLQKVDVVETLRIENHQKLRSFKV
SFQFLPPERYNDDKLLSPQKILHYMETRFFRLLLEAIRKRSAKLASLAVETRKASARDRD
PDGEGTADPAGLEDGEEEVEREVVDDQANEGDADASDAKRKGKQEEEVDYESEEEDRVDD
AEDKEDEEEEEEAEEQTPEVPQPDVSQQLSARVKGKGRAKGKTKGKTKQARGDGGEEAFD
QMRTNSVLESNPAIEHYRYDQQHELWCEVDLVLPVSKVHFDLTSVLSALAQNSVIMETKG
LTRCLLGETTASGGEKETVLNTEGINMQEMFNHSDVLDINRLYSNEVHAMAKTYGIEVAL
KVIEKEIKNVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRHAIRSNSSPLQQMTFETSY
KFLKQATMLGLHDQLVSPSACLVVGKVVKGGTGLFELKQPLQ
NT seq
5169 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttgggaaagatgtgccatggcggcgactggagggcatgtcgtttggcatgtac
tctaccgaggagataaggaagctgagtgtgaaggcgatcaccaacttcaggttcctcgac
agcgtggggaacgtagccccgaacagcctgtacgacctggcccttggaccagcagacatc
aaagaggtgtgttcaacctgctgtcaggacttcaacaactgtccaggacacctgggccat
gtagagcttcctctccctgtatacaacccgctgttctttgataaactctacatgtttatt
cgtggctcctgtctttcgtgtcacatgttaacgtgtcccagatctgccatccacctgctc
ctcaaccaactgaagttagtggaccatggggccatgcaggaggtctaccaactagagcag
gttctcttccagcacttggaagaaaaccccaaagccagtggagatgagatcggacagaca
ctgaagcagtttacagacaccacgcttggcgtgaacgctgagggttcagaaaacaccaaa
ccgatcaaacacctcgtggaaaagaagaacagtttgataaacgatttctggaggatctac
atgaaatgtaggaagtgccctcactgcagtagcggcaggttcacattgcgccgtgaacat
aacagtaagctgatcatcacaatgccatcagtaccactctccatggacaccactaatgat
gatctgatggctggaaagagagtctacctgacggctagcactgctagagaacacatgaac
aaactgtgggagcaagaaggtttcttcttgaagtgtctgttcgctgggatggaagctgca
acgacatcaagggagggagagggagggtcctatccagacctcttcttcctggacctcatg
gtggtcccaccctgcaggtatcgaccaatcaatcgactgggcgaccagatgttcacaaac
ggtcagacggtcaacatgcaggccgtcatgaaggactgtggagtcgtcagtaaacttttg
gctatcatagcaggggagaaaactgtgccggaggatgagcagaaggaggatgaggagcag
cagcagggagtgacaacatgtccgcccttgtcccttcctcaggctcctgaacagacggac
cagacgtttctggttgccatccccggtgtgaccctaacggataaactctacaacacctgg
gtgcgactacagacccacatcaacatagtcttcgacagcgacatggacaagatgattgtg
gagaaataccctggaatcagacagattttggagaagaaggacggattgttccggaaacac
atgatgggaaaacgagtggactacgccgcgcgatctgtgatctgtccagacatgtacatc
gagaccaacgagatcggcatacctatggtgtttgccaccaagctgacctacccgcagccc
gtcaccccgtggaacgtgaaggagctccgccaggccgtgctcaacggacccaacatccac
cccggtgcgtccatggtgatcaacgaggatggtaggaaaaccattctctcagccgactgc
ctcacgcagagggaagccgttgccaagcaactgctgacgccctgtcccggtccacataag
atgcccatgaagatagtgaatcgccatataaagaacggagacgtcttgttgctcaacaga
cagccaactctgcacagaccctccatacaagcccactgcgcacgcatcttaccaggagag
aaggtcctgaggctccactatgccaactgcaaggcgtacaatgcggactttgatggagat
gaaatgaacgcgcacttccctcaaagtgagctggccagagcagaggcctacacgttagtc
agcacggaccagcagtacctcgtcccaaaggatggtacacctttagcgggtctaatccag
gaccacatggtgtctggtacgaggatgacgatccgaggctgtttctttacccgagtccag
tacattgagctggtgtacaggggactcacggacaaaccaggcagagttacaatgctgcca
ccggccatactcaaaccccagccgctctggacagggaagcaggtggtgtcgactctcctg
ctgaacgtaatcccccagaatgctgtgcctctcaacctggctggcaaatccaaaatcccc
agcaaagcatggatccaagtcccaccacgcgctgctccaggatacagtcctgacagcatg
tgtgactcacaggtggtgattcgtcagggggagctgttggtgggggtcctggacaaggcg
cactacggctcctcagcctacggtctggtccactgctgctacgagctgtacggagggaag
accagtggcaagctgctcagctgtctggctcgactcttcactgcttacctgcagctgtac
aggggcttcacgttgggggtggaagatatcctggtgaaagcaggcgccaacaagcaaagg
aaaaaaatcattcaagattccctgcagattggcaccaaggccctccaggccgccttcaac
ctgcccgccactgtagatcagggcgaggcccagagccgctggcaggacgctcacctcaac
ccggaccagaaagacttcagcatggccgaccacaagttcaaagaagtggccaaccaagtg
aacaacgacatcaacaaggtgtgcatgcccgtcggactccacacctctttcccagacaac
aacctccaactgatggtccaatcaggagccaagggatctactgtgaacaccatgcagatt
tcatgtctactaggtcagatcgagttggagggccgcaggcctccactgatgccttctggg
aaatccttgccgtgcttccagccgtatgaccccgcccccggtgctgggggctttgtttct
ggaaggttcctcacgggcatcaaaccacaggagtttttcttccactgtatggctggcaga
gagggactggtcgacacagccgtgaaaacatccagatcaggatacctgcagagatgtgtc
ataaagcatctggagggcctggtagtgcagtacgatctgacggtgagggacagcgatggg
tccgtggtccagttcctgtacggagaagacggactggatatccccaagactccgttcctg
cagcaaaagcagttctctttcatagaggacaactacaaggtcatcaagcggtcccagggc
ctggacgaggtgttggcacgcctggaccctcgggctgccaatcgacactttgcatccatc
cagcgctggaaagcaaagagagaggtggcgtgtccgcggagaggagcgttcttgctgttt
tctcaaaagaagttgtccaagctgaaggcggccgcagaacaaatacatccagatgtctac
ggcagaaatgatgcagagtcgcagctcatggagatgtggcgcaccctggacgggccgagc
agatcgaaatacagccggaaggcctcccgctgccccgggccctcgctgggcctgttgaag
cccgacgtctgcttcggctcagtatcggagaccttccacagcatcacggagaagtacctc
cagaacgagggtgggaggagccgagacgccgtggacacccacagcctccggcggctgttg
ctctacaagtggcagcgttcgctgtgcgacccaggcgaagcagtgggtctgctggcagcc
cagtccataggcgagccctccacccagatgaccctcaacaccttccacttcgccggcaga
ggagagatgaacgtgaccttgggaataccccggctgagagagatcctaatggtggccagc
tccaacattaagacccccatgatgagcattccagtgctaaacaccaggaaagccctgaag
agggccaagacactccgaaagagactcaccagagtctgtctggccgaggtgctgcagaag
gtggatgtggtagaaactttgcggattgaaaatcaccaaaagctccggtcgttcaaagtc
agctttcagttcctgcctccagaacgttacaatgacgataagctgctgtcaccccaaaag
atcctccactacatggaaactagatttttccgtctcctgcttgaagccattaggaagcgc
agtgctaagctggcgtccctcgccgtggaaacaaggaaggcctccgccagagacagggac
cctgacggcgaaggaacagcggacccagctgggctggaggacggggaggaagaagtggag
cgagaggtcgttgacgaccaggcgaacgaaggagacgccgacgcttcagacgccaagcgc
aaaggcaaacaggaggaggaggtagactatgagagcgaggaggaggacagagttgacgat
gccgaagataaagaagatgaggaggaggaggaggaggctgaggagcaaacgccagaggtg
ccccagccggatgtttcacagcagttgtccgcaagggtaaaaggaaagggaagggcgaag
ggaaagacgaagggaaagacgaagcaagcgagaggagacggcggcgaggaggcgtttgat
cagatgaggaccaactccgtcctggagtccaacccggcgatagagcattaccgctacgac
cagcagcacgagctttggtgtgaggttgacctggtcctaccggtgtccaaagtgcacttt
gacctgacttcggtgctgtcggcgctggctcagaactccgtcatcatggagaccaagggc
ttgacgcgctgcctgctgggagaaaccacggcgagtggcggagagaaggagacggttctc
aacaccgaaggcatcaacatgcaggaaatgttcaaccacagtgatgtcttggacatcaac
agactgtactccaacgaggtccacgccatggcgaagacatatgggattgaagtggctctg
aaggtcatagagaaggagatcaaaaatgtgtttgccgtctatggtatcgaggtggacccc
agacatctgtcactggtagcagactacatgtgttttgaaggcgtgtataagcctttgaac
cggcacgccatccggtccaactcctcccctctgcagcagatgaccttcgagaccagctac
aaattcctcaaacaggcaaccatgctggggttacatgatcagctggtgtccccttcagct
tgcctcgtggtggggaaggtagtcaaaggtggaacgggactgttcgagctgaagcaacct
ctgcagtag
DBGET
integrated database retrieval system
