Cyclopterus lumpus (lumpfish): 117737884
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Entry
117737884 CDS
T09199
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117737884 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117737884 (clp1)
Enzymes [BR:
clum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
117737884 (clp1)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117737884 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
MMR_HSR1
AAA_16
AAA_22
TniB
AAA_18
Motif
Other DBs
NCBI-GeneID:
117737884
NCBI-ProteinID:
XP_034400018
Ensembl:
ENSCLMG00005010063
LinkDB
All DBs
Position
10:13666248..13669395
Genome browser
AA seq
441 aa
AA seq
DB search
MATEGVETTSEDVPVPGKVSTRFDLEKETELRFEVESGEAAEQVELELLTGMAEVFGSEL
NRNKKYTFGPGSKIAVFTWQGCSVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
DNERGPRVMVVGPTDVGKSTVCRLLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEGNRKASVGGCIIN
TCGWVKGSGYQALVHCASAFEVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRDTRDEKIREYFYGFRGVTFYPFSYEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSAEDGEEGARKGIVESPVCGFIVVTNVDTQTQVMKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagagggtgtggaaacgaccagtgaagatgttccagttcctgggaaggtcagc
accaggtttgacctggagaaggagactgaacttcggtttgaggtggagtcaggtgaggca
gcagagcaagttgagctggagctcctgacaggaatggctgaggtgtttggctcagagctg
aaccgcaacaagaagtacacattcggaccaggctccaagatcgcagttttcacctggcaa
ggctgcagtgtgaatctttatggaaagccagaggtagcttatgtgtccaaggatactccc
atgctgctctacctgaacacgcatgctgccctcgaacagatgagaaaacaagcagagagg
gacaatgagagggggccgagggtgatggtggtgggacctacagatgtaggaaagtcaact
gtgtgccgcctgctattaagctatgctgtaagagtgggccggaggccaacactggtggaa
ctggatgttggtcagagtggggtgtctgtacctggtacagtgtcggcactatgcattgag
cgcccggcagatgtggaggagggtttctcagtccaggctcctttggtctaccactttggc
tctactacccctgggaccaatatcaaactttacaataagttgacatcatgcttagcagag
gtgttttcccagcgctgtgaggggaacagaaaggctagtgttggaggctgtatcatcaac
acctgcggttgggtgaagggctctggataccaggctctagtccactgtgcctctgccttt
gaggtggatgtggtgctggtgctggaccatgagagactctacaatgaactcaaacgagac
cttcctcactttgttcgggttgtgctcctacccaagtccggaggtgtggtggagcgctca
aaggagtgcagacgggatactcgggatgagaagatccgcgagtatttctacggcttccgt
ggagtgaccttctaccccttctcctatgaagtgcgtttctcagacgtccgcatctataag
atcggagcaccatccatcccggactcctgcttgccgctgggaatgtctcaggatgacaca
cagctaaagcttgtgcctgtaacaccagggagagacctcacgtatcatgtcctaagcgtg
agcagtgcagaggacggagaggaaggtgccagaaagggtatagtagagagccctgtgtgt
ggctttatagttgtaactaatgtggacacgcaaacacaagtgatgaaagtgctgtcccca
gcacccagaccactgcccagacacactctacttatcatggacatccgcttcatggacatg
aaatga
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integrated database retrieval system
