Cyclopterus lumpus (lumpfish): 117740394
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Entry
117740394 CDS
T09199
Symbol
grin1a
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1a isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04020
Calcium signaling pathway
clum04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
117740394 (grin1a)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
117740394 (grin1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
clum04040
]
117740394 (grin1a)
Ion channels [BR:
clum04040
]
Ligand-gated channels
Glutamate (ionotropic)
117740394 (grin1a)
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
Motif
Other DBs
NCBI-GeneID:
117740394
NCBI-ProteinID:
XP_034402658
Ensembl:
ENSCLMG00005017251
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All DBs
Position
12:complement(15837234..15867109)
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AA seq
938 aa
AA seq
DB search
MRLFLLAVLLWCSCARAGCEPKIVNIGAVLSQKRYEQVFKDAVTQANQVYGRDKFKLTAI
SVTHKPNAIQMALSVCEDLISSQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAHVWFDLMREFNWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKKRNYENLDQLSYDNKRGPKAEKVLQFSQETNLTALLLEAKELEARVIILSA
SEEDAAAVYKAARFLNMTGSGYVWLVGEREMSGKALSEAPDGLIGLQLINGKNESAHIND
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWKTGPLFKRVLMSSKYPEGLTGRVEFNDD
GDRKYAHYSILNYQKSRLIQVGIYNGTQVVMNNQRKIIWPGGETEKPQGFQMSTRLKIVT
IHQEPFVYVKPTQLDGTCKEEMTLNGVLIKKVICTGPNETIPGRPIVPQCCYGFCVDLLI
KLAMTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTINNERA
QYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFS
PFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIV
ASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYR
HMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRK
DSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGI
AAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDRKSGRAEPDPQKKASFRSIS
TTLASSIKRRRSSKDTQYPPTDITGQLNLSDPSVSTVV
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgtttctgctggcggtgctcctctggtgctcctgcgcgcgggccggctgcgag
ccgaaaatcgtgaacatcggggccgtgctgagccagaagagatacgagcaggtcttcaaa
gatgcggtgacccaggccaaccaggtctacggcagggacaaattcaagctgaccgccatc
tccgtaacgcacaaacccaacgccatccagatggctctctccgtgtgcgaggacctcatc
tccagtcaggtctacgccatcctggtgagtcaccctccccagtccaatgaccacctcact
ccaacgcctgtctcctacactgcaggcttctaccgcatacccgtggtggggctgaccacc
cgcatgtccatctactcagacaagagcatccacctgtcctttctgcggacggtgcctccc
tattcccaccaggcgcacgtgtggttcgacctgatgcgcgagttcaactggaaccacatc
atcttgatagtgagcgacgaccacgaggggcgggccgctcagaagaggctcgagaccctc
ctggaggagagagaaacaaagaataaaaaaaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacctaaggcagagaaagtcctccagttcagccaggagactaac
ttaactgccctgctgctggaggccaaagagctggaggcccgagtcatcatcctgtccgcc
agtgaggaggacgctgccgcagtgtacaaggcggcccgcttcctcaacatgacgggctcg
gggtacgtgtggctggtgggcgagcgggagatgtcgggtaaagccctgagcgaggcgcca
gacggtctgatcggcctccagctcatcaacgggaagaatgaatcagcccacatcaatgat
gcggtggctgtggtggctcagtccatccaggagctgtttgagaaggagaatatcacggag
cccccgagaggatgtgtgggcaacaccaacatctggaaaacagggccactctttaaacgg
gtgctgatgtcgtcgaaataccccgagggcctcacaggacgcgtggagttcaatgacgac
ggagacaggaagtacgcccattacagtatcctcaactaccagaagagtcgactcattcaa
gtcggcatatacaatggaacgcaggtggtgatgaacaatcagcggaagatcatctggccc
ggaggagagacggagaaaccgcagggcttccagatgtccactcgattaaagatagtgacg
atacaccaggagccatttgtgtatgtgaaacccactcagctggacggaacatgcaaggag
gaaatgactttaaacggagtcttaattaaaaaggttatctgcactgggcccaatgagacc
atcccaggacgtccaattgtaccccaatgttgttatggattctgtgttgatctcctcatc
aagttggctatgaccatgaacttcacctatgaggtgcatctggtggccgatgggaagttc
ggaactcaggagcgggtgaacaacagtaacaagaaagagtggaatggcatgatgggcgag
ctcctggggggcctggccgacatgattgtagccccactgactataaacaacgaacgagcc
cagtacatcgagttctccaaaccctttaaatatcaaggcctcaccatccttgttaaaaag
gaaatccctcgcagtacgctggactcgttcatgcagccgttccaaagcacgctgtggctg
ctggtgggtctttcggtgcatgtggtggcggtgatgctttacctactagaccggttcagc
ccgtttggaagatttaaagtaaacagtgaagaggaagaagaagatgccctcaccttatca
tctgctatgtggttctcctggggagtgttgctgaattctggtataggagaaggtgcaccg
cgcagcttctcagcgagaatcctgggtatggtgtgggccggatttgccatgatcatagtg
gcttcttatactgccaacctggctgccttcctggtgttggacaggcctgaggagcgcatc
accggcatcaacgacccgaggctgagaaacccatccgacaagttcatctacgccacggtg
aagcagagctccgtggacatctacttccggcggcaggtggagcttagcaccatgtaccgc
cacatggagaagcacaactatgagagtgccgccgaagctatccaggccgtgcgtgacaac
aagctgcatgctttcatctgggattccgcggtgctggagtttgaagcctctcagaagtgc
gacctggtgaccacaggagagctgtttttccgctcgggctttggcattggcatgcgcaag
gacagcccctggaaacagaacgtgtccctggccattctcagttctcatgagaacggcttc
atggaagacctagataaaacctgggtgagataccaggagtgtgactcacggagcaatgcc
ccagccacactcacctttgaaaacatggcaggagttttcatgctggtggcaggaggaata
gctgcagggatcttcctaatcttcattgaaatcgcctataagcggcataaagacgcccgc
aggaagcagatgcagctcgcctttgcggcggtcaatgtttggaggaagaacctgcaggat
aggaaaagtggtagagcagagcccgacccccaaaagaaagcctcttttaggtccatcagt
accaccctggcttccagcatcaagagacgtaggtcctccaaagacacgcagtacccaccc
actgacatcacgggccaactcaacttgtctgacccgtctgtcagtaccgtggtgtaa
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