Cyclopterus lumpus (lumpfish): 117740639
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Entry
117740639 CDS
T09199
Symbol
notch1a
Name
(RefSeq) neurogenic locus notch homolog protein 1
KO
K02599
Notch 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
117740639 (notch1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_CA
Ank_2
EGF_2
Ank
Notch
NOD
NODP
Ank_4
Ank_5
Ank_3
EGF_3
DL-JAG_EGF-like
JAG1-like_EGF2
Motif
Other DBs
NCBI-GeneID:
117740639
NCBI-ProteinID:
XP_034403048
Ensembl:
ENSCLMG00005018745
LinkDB
All DBs
Position
12:complement(5968397..5990836)
Genome browser
AA seq
2478 aa
AA seq
DB search
MYRFFVKLTFLIPAIVISQGLKCSLPTESCLNGGWCEATSNGNGECKCPSDYVGNRCQYP
SPCSPSPCRNGGDCRAVSHGNTFDFRCVCRLGFSDRLCLTPTNHACMSSPCRNGGTCDLI
TLSAFRCRCSPGWSGKTCQLANPCASNPCANGGQCSAFDSTYICTCPAAFHGQTCKQDVN
ECAQTPSPCHNGGVCVNEVGSYNCRCPQEYTGRHCETPYMPCSPSPCQNGGTCVQKGDTI
YDCSCLPGFTGQHCEHNIDDCPGHNCQNGGVCVDGVNTYNCRCPPHYTGQYCTENVDECE
LMPNACQNGGTCHDTHGSYHCVCVNGWTGDDCSENIDDCASAACYHGATCHDRVASFFCE
CPHGRTGLLCHLDDACISNPCQKGSNCDTNPVNGKAICTCPPGYTGSACNLDIDECSLGA
NPCEHGGRCLNTKGSFQCKCLQGYEGPRCEMDVNECMSNPCYNDATCLDQIGGFHCICMP
GYEGVFCHINTDECASQPCLNNGKCIDKINSFHCECPKGFSGSLCQVDIDECASTPCKNG
AKCTDGPNKYTCECAEGYTGQHCETDINECYSDPCHYGTCKDGLASFTCYCRPGYTGRLC
ETNINECLSQPCRNGGTCQDRENTYICACLKGTAGFNCEVNLDDCKSKPCDYGRCIDKIN
GYECACEPGYIGTMCNINIDDCAINPCHNGGTCVDGINSFTCLCPEGYNDATCLSQVDEC
GSNPCIHGRCRDLINGYKCTCDSGWSGPNCDINNNECESNPCMNGGTCKDMTSGYHCTCR
AGFTGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGENCEILLAPCSPRPCKN
GGVCKEAEDYQSFSCICPEGWQGQTCEIDINECVKSPCRNGAICHNTMGSYQCKCQPGYT
GQKCETDTDDCKPNPCSNGGLCRDGINTFTCTCLPGFRGGRCEQDINECESNPCKNGANC
TDCVNSYTCTCPPGFSGINCELNTNDCTDSSCFNGGTCKDGINAFTCLCLPGFTGSYCEY
DINECDSKPCLNGGSCLDSYGTYMCTCPHGYIGVNCQILVRWCDLSPCKNGGSCWQQGAS
YTCQCQTGWTGLYCDIPSVSCEVAAKQQGVEVAHLCRNSGQCLDAGNTHYCRCQAGYTGS
YCQEQVDECSPNPCQNGASCTDYLGGYSCECVPGYHGVNCSKEINECQSQPCQNGGTCID
LINTYKCSCPRGTQGVHCEINLDDCNPSSDPLTNEPKCFNNGRCVDRIGGYQCVCPAGYV
GERCEGDVNECLSDPCDPIGSYNCIQLTNSYRCECSTGYTGQRCDKVFDGCKGRPCKNGG
TCAVASNTPHGFICKCPPGFTGSSCEYDSRSCGSLNCRNGGTCVSGHLGPRCLCPPTFTG
PECQTPTDSLCISNPCYNGGTCQIAPDAPFFQCSCPSNFNGLLCHILDYSFVGGFGRDIT
PPPEVEVSCEIPQCDEWAGNHICDSLCNNHACGWDGGDCSLNFDDPWQNCSAALQCWRYF
NDGKCDGQCNSPGCLYDGFDCQGQEGQCNPLYDQYCKDHYADGHCDQGCNNGECEWDGLD
CANNMPEKLADGHLVLVVHIPPEQLKNGSSAFLREISSVLHTNVVFRRNAKGEPMIFPYY
GNEQDLVKHNVLKRSADGWPEWASMPANVLGQVKESVSAMVSPRKRRELDPVQVKGSVVY
LEIDNRQCYQQSSECFQSATDVAAFLGALATSGNLNVPYIEAVTSVRPPSSSSELYPMYV
VFLGLAALGFICLGVLVSRKRRREHGQLWFPEGFKASEPSKKKRREPLGEDSVGLRPMKD
SDINLMDDNQNEWDDQDPDCRRFRFEEQAMLDLSDRTDHRKWTQQHLDAADLRIASIAPT
PPQGEIENDCMDVNVRGPDGFTPLMIASCSGGGLETGNIEEEEDPSAEIISDFIYQGANL
HNQTDRTGETALHLAARYARSDAAKRLLESSADANVQDNMGRTPLHAAVAADAQGVFQIL
IRNRATDLDARMHDGTTPLILATRLAVEGMVEELINCHADANATDDSGKSALHWAAAVNN
VEAAMVLLKNGANKDMQDNKEETPTFLAAREGSFETAKVLLEHFANREITDHLDQLPRDI
AQERMHHDIVRLLDEYNVVRSPGLHHGHLSTSSLSPPLCSPNDYLSNLKPTLSVKKVRKL
SSGGKGGKDGGKDSRMKKKKSLDAKGNLLDTSAVLSPVDSLESPHGYLSDVASPPMTSPF
QQSPPMSLNHLQGNGDHMGQMSMGKDLGCMSFDPNPPRLSHMPVSSPSSQGTTSIGGSRG
GQCDWISRMHPGVGQQGGFTQASPISHNMMGALHGVSTATLSQIMGYQNLQTSHLGSSAH
MMQQAHSRQLQHQNSNSTTGGQSLNQSFPNVELNGSDMQQLNNGRSMTIHTVMPQETQIL
GTQFLTPPSQHSYSGPMDNTPNHQLQVPDHPFLTPSPGSPDQWSSSSPHSNISDWSEGIS
SPPTSIHSQMNLIPDQFK
NT seq
7437 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgtttctttgtgaaactaacatttctgattcctgcgatcgtcatctcacaaggt
ctaaaatgctccctgcccactgagtcgtgcctaaatggaggatggtgtgaagccacctct
aacggaaatggagaatgcaagtgtcccagtgactacgtaggcaatcggtgccagtatcca
agcccctgcagcccatcaccctgccgcaacggtggcgattgccgcgccgtttctcacggc
aacacctttgatttccgctgcgtgtgccgcctgggtttcagcgaccggctatgcctgacc
cccaccaaccacgcctgcatgagctccccctgtcgcaacggaggaacatgtgatctcatt
accctctctgccttccgctgccgctgctcacctgggtggtcaggtaaaacctgccagctt
gccaacccatgcgcgtccaatccgtgcgcaaacggtggccagtgctcagccttcgattcc
acctacatctgcacctgcccggccgccttccacggtcaaacctgcaagcaagacgtcaac
gagtgcgctcagactccctcgccctgtcataacggcggtgtgtgtgtgaacgaggtgggc
tcatataactgccgctgtcctcaagagtacaccggccgacactgtgagacaccctacatg
ccatgcagcccctcaccgtgccagaacggaggcacctgtgtgcagaagggagacaccatc
tatgattgcagctgccttccaggtttcacaggtcagcactgtgagcataacatcgatgac
tgtccaggccacaactgccagaatggtggcgtgtgcgtggatggtgtgaacacctacaac
tgccggtgcccacctcattacacaggtcaatactgcacagaaaacgtggacgagtgtgag
ttgatgcccaacgcgtgccagaatggaggaacgtgccacgacactcacggcagctaccac
tgcgtctgcgtcaacgggtggacgggcgacgactgcagcgagaacatcgacgactgtgcc
agcgcggcttgttaccacggtgctacgtgccacgaccgcgtggcctccttcttctgcgag
tgtcctcacggacgaacgggtttgctgtgccaccttgacgacgcctgcatcagcaatccg
tgtcaaaagggttccaactgtgacaccaacccagtcaacggcaaggcaatctgcacctgt
cccccaggttataccgggtcagcctgcaacctggacattgacgagtgctccctcggcgcc
aacccctgtgaacacggtggccgctgcctcaacaccaaaggctctttccagtgcaagtgt
cttcaaggatatgaaggacctcgttgcgagatggacgtcaatgagtgcatgtctaatcct
tgctataatgatgccacctgcctggatcagattggagggttccactgcatctgtatgcca
ggatatgagggtgtgttctgccacatcaacacagatgagtgtgccagccaaccttgtctc
aacaatggcaagtgcatcgacaagatcaactccttccactgcgagtgccccaaagggttt
tcggggagtctgtgtcaggtggacattgacgagtgtgccagcacaccctgcaagaatgga
gctaagtgtactgacggtcccaacaagtacacctgcgaatgtgctgaaggttacacaggg
cagcactgtgagactgacatcaacgagtgctactctgacccctgccattacggcacctgc
aaggacggcctagcctccttcacctgctactgccgccctggctacactggccgcttgtgt
gagaccaacatcaatgagtgcctcagccagccctgcaggaatggtggcacttgccaggac
agggagaacacatatatttgtgcttgcctcaaaggcacagcaggtttcaactgtgaggta
aacctggacgactgcaagagcaaaccctgcgactacgggaggtgcatcgacaaaatcaac
ggctacgagtgtgcatgtgaacccggctacataggaacaatgtgtaacatcaacatcgat
gattgcgccatcaacccctgtcacaacgggggcacatgcgtggacggcatcaacagcttc
acctgcctgtgcccagagggctacaacgacgccacttgtctgtctcaggtggatgagtgt
ggcagcaacccctgcatccacggccgatgccgggacctcatcaacggctacaaatgtacc
tgcgactctggctggagcggccccaactgtgacatcaataacaacgagtgtgagtccaac
ccatgcatgaacggaggaacctgcaaggacatgaccagcggataccactgcacatgcaga
gctggcttcactggacctaactgccaaactaacatcaacgagtgtgcctccaacccctgc
ctcaaccagggcacctgcatcgacgatgtggctggatacaagtgcaactgtttgctgccc
tacactggtgaaaactgtgagatcctgctggcaccctgcagccccagaccctgtaaaaac
ggtggagtgtgtaaggaagctgaagactaccagagcttctcctgtatctgccctgaagga
tggcaaggtcaaacatgtgagatcgacatcaacgaatgtgtgaagagcccatgccgcaat
ggcgctatctgccataacactatgggtagttaccagtgcaagtgccagccaggttacact
ggccagaagtgtgagacagacacggatgactgcaaaccaaatccctgcagtaacggtggt
ctgtgccgcgatggcatcaacactttcacatgcacctgtctgcccgggttccgtgggggc
aggtgtgaacaggacataaacgagtgtgaaagtaacccctgtaaaaatggcgccaactgc
accgattgtgtcaacagctacacctgcacctgcccgcccggcttcagcggcatcaactgt
gagctcaacaccaacgactgcactgacagctcatgcttcaatggaggcacctgcaaggat
ggaattaatgcgttcacctgcctgtgtctgcctggattcactggcagctactgcgaatat
gatatcaatgagtgtgactccaaaccgtgtctcaatggaggatcttgtctcgacagttat
gggacatacatgtgtacctgtcctcatggctacatcggagtcaattgtcagattcttgtg
cgctggtgtgatttatccccctgtaaaaatggaggttcgtgctggcagcagggagcgtct
tatacctgccagtgtcagactggatggactggtctctattgtgacatccccagtgtgtct
tgtgaggttgcagccaaacagcaaggggtggaggtggctcacctgtgcaggaactcaggc
cagtgtctggatgccggaaacacacattactgtcgctgccaggccggctacaccgggagt
tactgccaagaacaagtggacgagtgctcaccaaatccttgccagaatggagcctcctgc
accgattatctggggggctacagctgtgagtgtgtccccggctaccacggtgtaaactgc
tccaaagagatcaatgaatgtcagtctcagccctgtcagaatggaggcacatgcatcgac
ctcatcaacacgtacaagtgctcgtgtcccagaggaacacaaggtgtccactgtgagatc
aatttggatgattgcaacccctccagcgacccactgaccaatgagcccaagtgcttcaat
aatgggaggtgtgtggaccgcatcggaggttaccagtgcgtgtgcccggcaggctacgta
ggagagcgctgtgaaggtgacgtcaacgagtgtttgtcagacccctgtgaccccataggg
tcttacaactgcatccagctcaccaacagctaccgctgcgaatgcagcactggatacaca
ggtcagcgttgtgacaaagtgtttgacggctgtaaaggaagaccctgcaaaaatggaggg
acatgtgctgttgccagtaacacgcctcatggtttcatctgcaaatgtccacctggcttc
accggctcctcctgcgagtatgattctcgttcctgcgggagtctgaattgcaggaatgga
ggtacatgtgtgtcaggccacctaggcccacgctgcttgtgtccaccaactttcactggg
ccagagtgccagacccccaccgacagcctctgcatctcgaacccctgctacaatggcggc
acgtgccagatcgccccagacgcgcctttcttccagtgcagctgccccagcaatttcaac
ggcctgctgtgccacatcctggactattcctttgttggaggttttggccgagacatcacc
ccacctccggaagtggaagtgagctgcgagattcctcagtgcgacgagtgggccgggaac
catatctgcgactcgctgtgcaacaaccacgcctgcggctgggatggaggcgactgctcg
cttaattttgatgacccgtggcaaaactgctctgcggccttgcagtgctggcgctacttt
aacgatgggaagtgtgatggccagtgcaacagccctgggtgtctctatgatggctttgat
tgtcagggacaggaaggacaatgcaacccgctgtatgaccagtactgtaaagaccactat
gctgacggtcactgtgaccagggctgcaacaatggagaatgtgaatgggacggcctggac
tgcgccaacaacatgccagagaagctcgcagacgggcacttagtcctggtggtccatatt
ccccccgaacagcttaaaaatggctcttcggccttcctcagggagatcagcagcgttctc
cacaccaacgtggtgttccgccgcaacgccaaaggagaaccgatgatcttcccttattat
ggcaacgaacaggacctcgtcaaacataacgtgctgaagcgctccgcagacggctggccc
gagtgggcctcgatgcccgccaatgttttgggtcaagtgaaagaaagcgtttctgccatg
gtcagcccccgcaaacgcagagagcttgatcctgttcaagtcaaagggtccgtggtgtac
ctggagattgacaaccgtcagtgttaccagcagtctagtgaatgcttccagagcgccaca
gatgtagctgcattcctcggagcgctggccactagtgggaatctcaatgtcccctacatt
gaagctgtcaccagtgtgagacctccttcctccagttcagagctctaccccatgtacgtg
gtcttcctgggcttggctgctttgggtttcatctgccttggtgttctggtgtctcgtaag
aggcgacgggagcacggccagctttggtttcccgaaggttttaaagcgtctgagcccagc
aaaaagaaacgcagagagccgttgggagaagattctgttggattgaggcccatgaaagac
tctgacatcaatcttatggatgacaaccaaaacgaatgggatgatcaggatccagactgc
aggcgcttcaggtttgaggagcaggccatgttggatttgagcgaccgtactgaccacagg
aaatggacacagcagcatctggatgcagctgacctgcgtattgcttccattgctcctacg
ccacctcagggagagatagagaatgattgcatggacgtgaatgtcagagggccagatggt
ttcactcccctgatgattgcgtcctgcagcggtggaggactggagactggcaacattgaa
gaggaagaggatccctcggcagaaatcatctctgacttcatttaccaaggcgccaacctc
cacaaccagaccgaccgcacaggcgagacggccctccacctggccgctcgctacgcccgc
tccgacgctgcaaaacgcctcctcgagtccagcgccgatgccaacgttcaggacaacatg
ggccgcacgccgcttcacgctgctgtggctgccgatgcacagggagtgttccagatctta
atccgaaaccgcgccaccgatcttgacgcccgcatgcacgacggaacaacaccgctgatt
ctggcaacccgattggcggtcgagggcatggtggaagagcttatcaactgccacgccgat
gccaacgccaccgatgattctggtaaatctgctcttcactgggccgcggctgtcaacaat
gtggaggctgctatggtgctgctgaaaaatggcgccaacaaagacatgcaagacaacaag
gaggagacaccaaccttccttgcggcccgtgaaggaagcttcgagacagccaaggttctt
ctggaacactttgccaatcgtgagatcaccgaccatctcgaccagctccccagagacatc
gcccaggagcgcatgcaccatgacatcgtccgccttctcgatgagtacaacgtggttagg
agtcccgggcttcaccacggccatctaagcacctcgagcctctcgccaccgctctgctcc
cccaatgactaccttagcaacctcaagcccacgctgtccgtcaagaaggttagaaaactc
agctccggcggaaaaggaggaaaggatgggggcaaagatagtagaatgaagaagaaaaag
tcgctggatgcaaagggtaacttgctagacacgtcagctgtcctctccccggttgattcc
ctcgagtcaccgcatgggtacctgtctgatgtggcctctcctcccatgacatcacccttc
cagcagtccccacctatgtctctaaatcacctgcaaggcaatggagaccatatgggccag
atgagcatgggcaaggatttgggctgcatgtcttttgaccctaacccaccccgtctctcc
cacatgcctgtgtccagccccagcagtcagggcacaacatccataggtggcagcagagga
ggccagtgtgactggatctccaggatgcacccaggtgtaggccagcaaggaggcttcacc
caggcgtcacccatatctcacaacatgatgggtgctctgcatggcgtcagcactgccacc
ctgtctcagatcatgggctaccagaatctgcagaccagccacctcggctcgtccgcacac
atgatgcaacaggctcattcgcggcagctccagcaccagaactctaactccaccacaggt
ggccagtccctcaaccagagcttcccaaacgtcgagctgaacggctcagacatgcagcag
ctgaacaacggccgctctatgaccatccacaccgtcatgccacaggagacacagatcctg
ggcacccagtttctcacccctccctcccagcatagctattctggccccatggacaacaca
cctaaccaccagctacaggtgcctgaccacccgtttctaactccctcccccggctcccct
gaccaatggtccagctcgtccccacattccaacatctctgattggtcggaaggcatctcc
agccctcctacaagtatccattcgcagatgaatctgatcccagaccagtttaagtag
DBGET
integrated database retrieval system
