Cyclopterus lumpus (lumpfish): 117747441
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Entry
117747441 CDS
T09199
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03020
RNA polymerase
clum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117747441 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
117747441 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clum03021
]
117747441 (polr2a)
03400 DNA repair and recombination proteins [BR:
clum03400
]
117747441 (polr2a)
Enzymes [BR:
clum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117747441 (polr2a)
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117747441 (polr2a)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117747441 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
117747441
NCBI-ProteinID:
XP_034412541
Ensembl:
ENSCLMG00005014945
LinkDB
All DBs
Position
18:8374547..8387682
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDST
NPKIKDILIKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLNPERVHEIFKRISDEEDVILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMIDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPMLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAIIKPRPMWTGKQIFSLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNVVTLKPSHKAFEKKFRFDCTNERALRRILQEDVVKDVLTNAHVQGSLEKEFDKMKED
REVLRAIFPTGDSKVVLPCNLARMIWNAQKIFRINIRTPTDLNPLRVVEGLQDLSKKLVI
VNGEDPLSRQAQQNATLLFNIHLRATLCSKRMTEEFRLSTEAYDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
NHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHAESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPSGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcag
ttcggcatcatcagcccagatgagcttaaacggatgtccgttacagaagggggaatcaag
taccccgaaacaacagaaggtggacgccctaaacttggtggccttatggacccaagacaa
ggggtcatagaacgaactggaagatgtcagacatgtgcaggcaacatgacggagtgccct
ggccactttgggcacatagaactggcaaagccagttttccacgttggcttcgtaacaaag
ataatgaaggttcttcgatgtgtttgtttcttctgttcaaagctgttggtggattcgacc
aatccaaagatcaaagatatcctgataaaatcgaaagggcagcccaggaaacgtttgaca
cacgtgtacgagctgtgcaaaggaaaaaatatttgtgaaggaggagaggagatggacaac
aaatttggaatggaacagcaggagactgaagaggacattaccaaggagaagggccacggt
ggatgtgggcgctaccagccacgcatcagacgctccggcttggagctgtatgctgagtgg
aagcacgttaatgaggattcgcaagaaaagaaaatcctgctgaaccccgagcgcgtgcac
gagatctttaagcgcatctcggatgaagaggacgtcatcttgggcatggaccccaagttt
gcccgaccagaatggatgattgtcactgtgttgcccgtgcctccactggctgtcaggcct
gctgtagttatgcagggctccgctcgaaaccaggatgacttgacccacaagctggccgac
atcgtcaaaatcaacaaccagctgagaagaaacgagcagagtggcgccgcagcgcacgtc
atagctgaagatgtcaaactgctccagtttcatgttgcgaccatgattgacaacgaattg
ccaggcctaccaagggcaatgcaaaagtctggtcgccctctcaaatccttaaaacagcgt
ctaaaggggaaggaggggcgagtccgaggtaacctcatgggcaagcgtgtggacttctct
gcacgaactgtcatcaccccagaccccatgctgcaaatcgaccaagtgggcgtaccacga
tccattgcggccaatatgacctttccagaaatagtcacaccctttaatattgacagatta
caagagctggtgcgaagaggcaacagccagtacccgggagccaaatacatcattcgtgac
aatggagacagaattgacctgcgattccacccaaaaccaagtgaccttcacctgcaaatt
ggctacaaggtggaaagacacatgtgtgacggtgacatcgtcatctttaacagacaacct
acacttcataaaatgtccatgatggggcacagggtgcggattctgccatggtccacgttt
cgactcaacctcagtgtcaccactccatacaatgctgactttgacggggatgagatgaac
ctccacctgcctcaatccctcgagacgagggcagagattcaggagctggccatggtgccg
cgtatgatcgtcacaccccagtccaacaggcccgtcatgggtatcgtgcaggacaccctc
acggccgtccgcaagttcaccaaacgagatgtcttcttagagcggggggaagtgatgaac
ctcctcatgttcctctccacttgggacgggaaagtgcctcagccggctatcatcaagccc
cgtcctatgtggacaggcaagcagatcttcagcctaatcattcccggacacatcaacgtg
atccgcacacacagcacacatccggacgaggaagacagtggcccttacaagcacatctca
cctggggacaccaaggtcgtagtggagaacggcgagttgatcatgggaatcctgtgtaag
aaatctctgggaacctcagccggctccctcgtccacatctcctacctggagatgggccac
gacatcaccagactcttctactccaacattcagactgtggtcaacaactggctgctcatc
gagggtcattccattggtattggtgactctattgctgatgccaagacctaccttgacatc
cagaacaccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagcccacaac
aacgagctggagccgacccccggtaacacactgaggcagacctttgagaaccaggtgaat
cgtatcctcaacgatgctcgtgacaaaacgggatcctcagcccagaagtctctgtctgaa
tacaacaacttcaagtccatggtggtggctggttctaagggatcaaagattaacatctca
caggttattgccgtggtggggcagcagaacgtggagggtaaacgaatcccctttggcttc
aaacaccgcacgctgcctcacttcatcaaggatgattacggtcctgagagtagaggcttt
gtggagaactcctacctggctggcctgactccaacagagttcttcttccacgccatggga
ggcagagagggtcttatcgatacagctgtcaagactgctgagactggttacatccagcgg
cgtctgatcaagtctatggagtcggtgatggtgaagtacgacggcacggtgcgtaactcc
atcaaccaggtggttcagttgcgttacggtgaggacggcctggcaggagagaacgttgag
ttccaaaacgtggtgacactcaaaccctcgcacaaggcctttgaaaagaagttcaggttt
gattgcaccaatgagcgagcgctgaggcggatactgcaggaggacgtcgtgaaagacgtg
ctgaccaatgcccatgtgcagggatccctggaaaaggaatttgacaagatgaaggaggac
agagaggtcctccgagccattttccccaccggggacagcaaggtggtgctgccatgcaac
ctggccaggatgatctggaacgctcagaagatcttccgtatcaacattcgaaccccaaca
gacctcaatcctctcagggtggtcgagggtcttcaggatctgagtaagaagctggtgatt
gtgaatggtgaagacccgctcagtcgacaggcgcagcagaacgccactctgctcttcaac
atccacctgcgtgccacactctgctctaagcgcatgaccgaggagttccgcctttccaca
gaggcttacgactggctgctgggggagattgagaccaaattcaaccagtccatcgctcac
ccgggtgaaatggttggtgctctggctgctcagtctctgggagagccggccacccagatg
accctgaacactttccactacgccggtgtgtcggccaagaacgtgacgctcggtgtgcct
cgactaaaggagttgatcaacatctccaagaggcccaaaacgccctcgctgacggtgttc
ctgttgggtcaggccgcccgcgatgctgagagggccaaggacatcctctgtcggctggag
cacaccacgctgcgaaaggtgacggccaacaccgccatctactacgaccccaacccccaa
aacactgtggtggccgaggaccaggagtgggtgaacgtctactacgagatgcccgacttt
gacgtgacgcgcatttccccctggctgctgcgcatcgagctcgaccgcaagcacatgacc
gatcgcaaactgactatggagcagatcgcagagaagatcaacgcaggttttggagatgac
ctgaactgtattttcaatgacgacaacgcagagaagctcgttctgcgaatcagaatcatg
aacagtgatgagaataagttccaagaggatgaggaggtggtggataaaatggatgatgac
gtgttcttgaggtgcatcgaatccaacatgctgacagacatgaccctacaaggcattgag
cagatcagcaaggtgtacatgcacttgccccagactgacaataagaagaagatcatcatc
acggaggaaggtgagttcaaggccctgcaggagtggatcctcgagacagacggcgtgagc
ctcatgagggtcctcagcgagaaggacgtagatcccgtcaggaccacctccaacgacatt
gtggagatcttcacggtcttgggaattgaggcagtgcgaaaggctctggagagggagttg
aaccacgtcatctcctttgacggctcctatgtcaactaccgtcacttggccctgctgtgt
gacaccatgacctgccgcggtcacctgatggccatcacgcgtcacggcatcaaccgtcaa
gacacaggaccactcatgaagtgttcctttgaggagacggtggatgtgttgatggaggcg
tcatcccatgccgagagtgaccccatgaagggtgtgtcggagaacatcatgcttggccag
ctcgcccctgctggtacaggatgcttcgacctgctgttggatgcggagaagtgtaaatac
ggcatggagatccctacgaatattcctggcatcagcgtggccggacccagtggaatgttc
ttcggcacggtgccgagtcccatgagcggcatgtcgcctgccatgaccccgtggaacacc
ggagcaacgccggcctacggtgcctggtctcccagcgtcggaagcggcatgacccccgga
gcagccggtttctctcccagtgcagcgtcggacgcaagcggcttctctccaggctattcc
ccggcctggtctcccactcctgggtctccagggtccccgggacctgccagcccgtacatc
ccgtctccaggtggagccatgtcacccaactactcccccacctccccggcctacgagcct
cgctcccccggaggctacaccccacagagccccggctactccccaacatcaccctcctac
tcccccacttctccctcttactccccgaccagccccaactacagcccgacatctccctcc
tactcacccacctcgcccagttactccccgacgtctccgtcctattcgcccacgtctccg
tcttactccccgacctccccctcctactccccgacctccccctcctactcccccacatcc
ccctcctactctcccacctcgccgagctacagccctacatcgccgagctacagcccgacg
tcgcccagctactcgcccacctcaccttcctactcccccacctccccctcttattctcca
acctctccgtcttactcccccacctccccgtcctactcgcccacctctccctcctactcg
ccgactagcccgagctacagcccaacatcgccgaactacacgcccacctcacccagttat
tcccccacttctccttcctactcccctacatcgccctcttattccccaacctcccccaat
tacaccccgaccagccccaactactcccccacctctccgtcttactcccccacctctccg
tcctactccccctccagcccacgtttcaccccgcagtcgcccacctacacacccagctcc
ccctcatacagccccagctctccctcctactcccccacctcccccaaatacaccccaact
tccccctcatacagccccagttccccggagtacacccccacctctcccaagtactccccg
acatcgccaaagtactccccgacatcgccgaagtactcgccaacttcccctacttactca
ccaacaactccaaaatacagccccacttctcctacctactcccccacctcgcccacatac
acccccaccagccccaaatactcccctacctcccctacttactccccaacttcacccaag
tactcacccacgtctcctacgtactcgcccactagtcctaaaggctccacgtacagcccc
acctcccctggatacagccccacctcccccacctacagcccggccatcagcccagacgac
agcgacgaggagaataactga
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integrated database retrieval system
