Clavispora lusitaniae CBS 6936: A9F13_01g07161
Help
Entry
A9F13_01g07161 CDS
T05147
Name
(GenBank) putative DNA-directed RNA polymerase subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
clus
Clavispora lusitaniae CBS 6936
Pathway
clus03020
RNA polymerase
clus03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clus00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A9F13_01g07161
09124 Replication and repair
03420 Nucleotide excision repair
A9F13_01g07161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clus03021
]
A9F13_01g07161
03400 DNA repair and recombination proteins [BR:
clus03400
]
A9F13_01g07161
Enzymes [BR:
clus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A9F13_01g07161
Transcription machinery [BR:
clus03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
A9F13_01g07161
DNA repair and recombination proteins [BR:
clus03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
A9F13_01g07161
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-ProteinID:
OVF11231
UniProt:
A0AA91Q5F4
LinkDB
All DBs
AA seq
1666 aa
AA seq
DB search
MDQATKRPRDGGLNDPRLGSIDRNFKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIK
KVCECVCMHCGKLLVDDTNPLMAQAIKIRDPKKRFNAVWNVCKTKMVCEADIINEEGEVT
SGRGGCGHTQPTVRRDGLKLWGTWKQNKSFDESEQPERRLLTPSEILSVFKHISSEDCHR
LGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGEDDLTFKLADIIKANINVQRLEM
DGSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLM
GKRVDFSARTVISGDPNLDLDQVGVPLSIARTLTYPEIVTPYNIHRLTEYVRNGPNEHPG
AKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVK
VMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICAVPLQIVSPQSNKPVM
GIVQDTLCGIRKMTLRDIFIEYEQVMNMLYWIPNWDGVIPPPAIIKPKPLWSGKQILSMA
IPKGIHLQRFDDGNDMLSPKDKGILIVDGEIIFGVVDKKTVGATGGGLIHTVMREKGSQV
CAQLFSSIQKVVNYWLLHNGFSIGIGDTIADKDTMRDVTTTIQEAKQKVQEIIMDAQQNR
LEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQM
SACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGR
EGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTAVEKQ
SVDTIPGSDAKFEKRYRIDLLDPSKSISESLLDSGKEIKGDVKLQKVLDSEYEQLLKDRK
YLREVCFPNGDFNWPLPVNLRRIIQNAQQIFHSGRQRASDLKLDEIVEGVKALCSKLLVI
RGKSRLAKEAQEDATLLFQCLVRSRLAARRIIEEFKLSRISFEWVCGEIETQFQKSIVHP
GEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYL
DPEIASDIEKAKVVQSAIEHTTLKNVTSATEIFYDPDPRSTVIEEDYDTVEAYFAIPDEK
VEETIDNQSPWLLRLELDRAKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIRC
RVIRDPKLEEEGDHEEDQILKRVEAHMLESISLRGIPGITRVFMMQHKMSTPDESGEFSQ
KQEWVLETDGVNLAEVIAVPGVDSSRTYSNNFIEILSVLGIEATRSALYKEILNVIAFDG
SYVNYRHMALLVDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILLDAGAAAELDD
CRGISENVILGQMPPLGTGAFDVMVDDKMLQSVGPNVGVGAANQNGTYAEDGGATPYREY
EMEDDKIQFEEGAGFSPIHTANVSDASGSLTSYGGQPSMTSPTSPFSYGGASPAFGGATS
PGYGGTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPQYSPTSPQYSPGSPSYSPRSPSYGDKKEDEKK
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagcgacaaaaaggccaagagacggaggcttgaatgatcctagattaggttct
attgatcgtaatttcaagtgtcagacctgtggtgaagatatggccgaatgtcccggacat
tttggtcacatcgagttggcaaagcctgtattccacattggttttattgccaaaattaag
aaagtttgcgaatgtgtgtgtatgcattgtggtaagcttttggtggatgatactaaccca
ctaatggcccaggccattaagatcagagatccaaaaaagagattcaacgctgtgtggaac
gtctgcaaaacaaaaatggtttgcgaggctgatatcatcaacgaagaaggtgaagttacc
tctggaaggggaggatgtggtcatacccagcccactgttcgtagagacggtttgaaattg
tggggtacttggaaacaaaacaaaagtttcgacgaaagcgaacaaccagagcgtcgtttg
ttgactccgtcggaaattttgagtgttttcaaacacatcagctctgaagactgccataga
ttgggtttcaacgaagactatgcaagaccagagtggatgttaattacagttttgcccgtt
cctcccccaccagtgagaccttccattgctttcaacgatacggcaagaggcgaagatgac
ttgacatttaagttggctgatatcatcaaggccaacatcaatgtccagcgtcttgaaatg
gatggttcacctcagcatgtcatcagtgaattcgaagcattgttgcagttccacgtggcg
acttacatggataacgatattgctggtcaaccacaggcccttcaaaagacgggtcgtcct
atcaaatccattagagccagattgaagggtaaggaaggtagattgagaggcaacttgatg
ggtaagcgtgtggatttttctgctcgtactgtcatttccggtgaccctaatcttgatctt
gatcaggttggtgttccattgtcgattgcaagaaccttgacttatcccgaaatcgtcact
ccatacaatatccaccgcttaactgaatacgtccgcaatggtccaaacgaacacccaggt
gccaaatatgtcattcgtgatacaggagaccgtattgatttgagatacaacaaacgagct
ggtgatattgctttgcaatacggctggaaagtggaacgtcacttaatggatgatgatcca
gtgttattcaaccgtcagccctccttgcacaagatgtctatgatggctcatagagtcaaa
gttatgccgtactccacatttagattgaatttgtctgtcacatcgccatacaatgcagat
ttcgatggtgatgaaatgaacttgcatgttccacaatcgcaggagacaagagctgaattg
tcccaaatttgtgctgttccattgcagatcgtttctccacaatccaataagcctgttatg
ggtattgtgcaagataccttgtgtggtattcgtaaaatgacgttacgtgatattttcatt
gagtacgagcaggtgatgaacatgttgtattggattccaaactgggacggtgttatacca
cctcctgcaattatcaaacccaagcctttgtggtccgggaaacaaatcttgtcgatggct
attccaaaaggtattcacttacaaagatttgacgatggcaatgatatgctcagtcctaag
gataaaggtatcttgattgttgatggtgaaattatctttggtgtcgtcgataagaaaaca
gtcggtgccactggtggaggtttgattcataccgtcatgagagaaaagggttcacaagta
tgtgcacaattattcagttccatacagaaggttgtgaactactggcttttgcataatggt
ttctccattggtataggtgatactattgccgataaagataccatgagggatgttaccaca
acgattcaagaggctaaacaaaaagtgcaagaaattattatggacgcacagcagaataga
ttagaaccagagcctggtatgacattgagagaatcgtttgagcacaatgtttctcgtgtt
ttgaaccaggctcgtgatacagctggtcgttcggcagaaatgaacttgaaggacttaaac
aatgtgaagcagatggtcacatctggttccaagggttcgtttattaatatctcccaaatg
tcggcgtgtgtgggtcagcaaattgtcgaaggtaaacgtattccatttggtttcgcagac
cgtactttgccacatttcactaaagatgactactctcctgagtctaagggtttcgtggaa
aactcgtatttgagaggcttgacccctcaagagtttttcttccacgccatggctggtaga
gagggtcttattgatactgctgtcaagactgcagagactggttacattcaacgtcgtttg
gtcaaggctttagaggatattatggtccattatgatggtacaactagaaactccttgggt
gatatcattcaatttgtctatggtgaagacggtattgatggtactgctgtcgaaaagcaa
tcagtggataccattccaggttcagatgctaagttcgagaagcgttaccgtattgacttg
ctagatccaagtaagtccatttccgaatctttacttgattcaggaaaggagattaagggt
gatgtgaagttgcagaaggttttggattcagaatacgaacagttgcttaaggatcgtaag
tacttgagagaggtatgttttccaaacggtgacttcaactggcctttacctgtcaacttg
cgtcgtattatacagaatgctcagcagattttccatagtggtcgtcaaagagcctctgat
ttgaagcttgatgagattgtcgaaggcgttaaagctctctgcagcaagcttcttgtgatc
cgtggtaagtctcgtctcgcgaaggaagcacaggaagatgcaacattgttgttccaatgt
cttgttcgttcaagattagcagcacgcagaattatagaggagtttaaattgagcagaatc
tcttttgaatgggtttgtggtgaaattgagactcaattccagaagtcgattgttcaccca
ggtgaaatggttggtgttattgccgcacaatctatcggtgaaccggctacacagatgacg
ttgaatacattccattatgccggtgtgtcgtccaagaatgttacattgggtgttcctcgt
cttaaggaaattcttaacgtggcaaagaacatcaaaacaccggcacttactgtgtactta
gatcccgagatcgcatcagatattgagaaagccaaggttgtgcagtctgcgatcgagcac
acgacgttgaagaatgtcacttctgctactgaaattttctacgatccagatccaagaagc
acagttattgaagaggattacgatactgtcgaagcttactttgctattccggatgaaaag
gttgaagaaacaattgacaatcaatctccatggttgcttcgtcttgaattggacagagct
aaaatgttggacaagcagttgacaatggcccaagttgcagaaaagatttctcaaaacttc
ggtgaagatttgttcgttatttggtctgatgatactgctgataaattgattatccgttgt
cgtgttatccgcgatccaaaattggaagaagagggtgaccacgaggaagatcaaatcttg
aagcgcgtggaagcacatatgctcgagtctatctcattacgtggtattccaggtatcacg
agagttttcatgatgcaacacaagatgagcactcctgatgaaagcggtgaattttcgcag
aaacaggagtgggttttagaaactgatggtgtgaacttagctgaagtcattgccgtacct
ggtgtggattcttctcgtacctactctaacaatttcattgaaattttgtctgtgttgggt
atcgaggctacacgttccgccttgtacaaggagattcttaatgtcattgctttcgatggt
tcttatgtgaactaccgtcatatggcgttgttagtcgatgttatgacttctcgtggccac
ttgatggcaatcacacgtcacggtatcaacagagcagagactggtgctttaatgagatgt
tctttcgaagaaacggtcgagattcttttggatgctggtgcagctgccgagttggatgat
tgtcgtggtatttctgaaaacgtcatcttgggtcaaatgcctccattgggtactggtgca
tttgatgttatggttgatgacaagatgttacagctggtgggtccaaatgttggtgttggt
gcagcaaaccaaaacggtacatatgctgaagatggtggtgctactccttacagagagtac
gaaatggaggatgataagattcagtttgaagaaggtgctgggttttcgcctattcatact
gctaatgtttctgatgcatccggttcccttacttcgtatggtggccagccatcaatgaca
tccccaacttctccattctcctatggtggtgcatcgccagcatttggtggtgctacgtct
cctggatatggtggaacttctccaacgtactcgccaacttcgccaagttattctccaact
tcgccaagttactctccaacttcgccaagttactcacctacttcgccaagttattcacca
acttcaccaagttactcacctacttcgccaagttattcaccaacttcaccaagttactca
ccaacttcaccaagttactcgccaacttctcctagttactcaccaacttcgccaagttac
tcaccaacttcgccaagttactcgccaacttctccaagttactcaccaacttctccaagt
tactcgccaacttcgccaagttactcaccaacttctccaagttattcaccaacttctcca
agttactcaccaacttcgccaagttattcgccaacgtcccctcaatactcgcctacttct
cctcaatactctccgggttcgccttcctattcgccacggtctccactgtacggtgacaag
aaggaagacgagaagaaatag
DBGET
integrated database retrieval system
