Columba livia (rock pigeon): 102088079
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Entry
102088079 CDS
T02912
Symbol
POLR2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
clv
Columba livia (rock pigeon)
Pathway
clv03020
RNA polymerase
clv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
102088079 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
102088079 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clv03021
]
102088079 (POLR2B)
03400 DNA repair and recombination proteins [BR:
clv03400
]
102088079 (POLR2B)
Enzymes [BR:
clv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
102088079 (POLR2B)
Transcription machinery [BR:
clv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
102088079 (POLR2B)
DNA repair and recombination proteins [BR:
clv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
102088079 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
102088079
NCBI-ProteinID:
XP_005511038
UniProt:
A0A2I0LXN8
LinkDB
All DBs
Position
Unknown
AA seq
1167 aa
AA seq
DB search
MQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDL
QAEAQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVD
ITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFII
NGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGA
KKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDE
AFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGY
MVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGK
DFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNS
PIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEE
WSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDI
REREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDT
LEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSA
MGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTG
YNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDK
LDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQV
MVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII
NPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEV
LYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFG
EMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS
LVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgcagtatgatgaagatgatgatgaaatcacccccgacttgtggcaagaagcctgctgg
atcgttattagctcctattttgatgaaaagggtctagtcaggcaacagttggattctttc
gatgagtttattcagatgtctgtgcagagaattgttgaagatgctccaccaattgattta
caagctgaagcccagcatgccacaggagaagtggaagagccgccccggtatctgttgaag
tttgaacaaatctacctctccaaacctacacattgggaaagagatggagcaccatcacct
atgatgcccaatgaagccagactgagaaaccttacgtattcagcccccttgtatgtggat
ataactaaaacagttattaaagaaggggaggatcagttacagacacagcatcagaaaact
tttataggaaaaattcctattatgttacgttcaacatactgtttgctgaatggcttaact
gaccgtgatctttgtgaactgaatgaatgcccacttgatcctggtggctactttatcatc
aatggatcagaaaaggttctgattgctcaagagaaaatggctacaaacacagtgtatgtg
tttgcaaagaaagattcaaaatatgcctacacgggagagtgtagatcttgtctggaaaat
tcctctcgaccaacaagtactatatgggttagcatgctggccagaggtgggcagggtgca
aagaagagtgctattggtcagcgcattgtagcaactttgccatacatcaaacaagaagtt
cccatcataattgtctttcgtgcactaggctttgtgtctgacagggacattttagagcac
atcatatatgatttcgaagatccagaaatgatggaaatggtcaagccttctctggatgaa
gcgtttgtcattcaggagcagaatgttgctctaaacttcattggatcaagaggtgcaaag
ccaggtgtcaccaaagagaagagaatcaagtacgctaaagaagtcttgcagaaagaaatg
ctgccgcatgttggtgtcagtgacttctgtgaaaccaaaaaggcctattttctagggtat
atggttcatagattgttgctggcagcactgggaagaagagagcttgatgacagagatcat
tatggcaacaaaagactggatcttgctgggccactgttagctttccttttcagaggaatg
tttaagaatttgctgaaggaagtgagaatatatgcacaaaagtttattgacagagggaaa
gatttcaacttggaactggcaattaaaacaagaattatttcagatggtttaaagtattca
ctggcaactggaaactggggtgaccagaaaaaagctcatcaggccagagcaggagtctct
caggtgttaaaccgcctgacttttgcatctacgctttcccatctgaggcgcctgaattct
ccaattggtagagatggtaaactagcaaagcccagacagcttcacaatacgctgtgggga
atggtttgccctgctgagaccccagagggtcatgccgtaggacttgtgaagaacttagcc
ctgatggcttatatttctgtggggtctcaaccatccccaattttggaattcttggaagag
tggagtatggaaaacctggaagaaatatctccagcagcaatagctgatgccaccaagatt
tttgttaatggctgctgggtaggaatacacaaagatccagagcagctcatgaatacccta
aggaagctccgtcgtcagatggacatcattgtgtcagaggtctcaatgattagagatatt
cgtgagcgagaaatccgcatctataccgatgcaggcagaatttgtcgaccccttttaatt
gtggaaaaacagaaattgctgttgaagaaaaggcatattgaccaactgaaggaacgagag
tataacaattacagttggcaggatcttgtggccagtggtgtagtagagtacattgataca
ctggaagaagagactgtgatgctggcaatgactccagatgacttgcaagagaaaggtgtg
gcctattgttcaacatacacacactgtgagattcacccgtctatgatcctgggagtatgt
gcatctattattcctttccctgatcacaaccagtctcccaggaacacataccagtctgct
atgggtaaacaggctatgggagtttacattacaaacttccacgttcgtatggatacactg
gcacatgtattgtattatcctcagaagccccttgtaacaacacgctccatggagtacttg
cgatttagagaattaccagcaggtatcaattcaattgtagccattgcatcatatacaggc
tataaccaggaagactctgtcatcatgaaccgttctgctgttgacagaggctttttcaga
tctgtattctatcgctcatacaaagagcaagagtctaaaaaagggtacgaccaagaggaa
gtttttgaaaagccaacacgtgaaacttgccaaggcatgagacatgcaatctatgacaaa
cttgatgatgatggtttgatagcacctggggtacgtgtgtctggggatgatgtcatcatt
ggcaaaacagtaacactgccagaaaatgaagatgaactggaaagcactaacagacgtttc
acgaagagagactgtagcacttttctgcgaactagtgagactggcattgtagatcaggtc
atggtaacccttaaccaggaaggatacaagttctgcaagattagggtacgctctgtaaga
atacctcaaattggagataaatttgccagcagacacggtcagaaaggaacctgtggtatc
cagtacaggcaagaggatatgcccttcacctgtgaaggcatcacacctgatataattatc
aaccctcatgccatcccttcccgcatgaccattggtcacttgattgagtgtcttcaggga
aaggtgtctgcaaacaagggagaaattggtgacgctacgccttttaatgatgctgtcaat
gtgcagaagatttccaatcttttatcagattatggctatcatctaagaggaaatgaggtc
ctttacaacggtttcactggtcgaaaaatcacatcacagatcttcattggtcctacatat
tatcagcgtttgaaacatatggtagatgacaaaatccattctcgagcaagagggccaatc
cagatacttaacagacagcccatggaaggtagatctcgtgatggtggccttcgctttgga
gaaatggaacgagattgccagattgctcatggagcagcccagttcttgagagagcgattg
tttgaagcttcagacccataccaagtccacgtctgtaacctctgtggaatcatggcgatt
gcaaacacaaggactcacacctatgaatgccggggatgccgtaataaaactcagatatct
ttggttcggatgccctatgcctgcaaactcctcttccaagaactgatgtccatgagtatt
gcacctcgtatgatgagtgtttag
DBGET
integrated database retrieval system
