Colossoma macropomum (tambaqui): 118809230
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Entry
118809230 CDS
T09004
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03020
RNA polymerase
cmao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118809230 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
118809230 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmao03021
]
118809230 (polr2a)
03400 DNA repair and recombination proteins [BR:
cmao03400
]
118809230 (polr2a)
Enzymes [BR:
cmao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118809230 (polr2a)
Transcription machinery [BR:
cmao03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
118809230 (polr2a)
DNA repair and recombination proteins [BR:
cmao03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
118809230 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
118809230
NCBI-ProteinID:
XP_036428246
LinkDB
All DBs
Position
Unknown
AA seq
1966 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDAN
NPKIKDILSKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQQENDEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKY
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESIMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNMATLKPSNKAFEKKFKFDYTNERALRRTLQEDVLKDVMTNAHVQSSLEREFEKMRED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVVEGVQELSKKLII
VNGDDPLSKQAQQNATLLFNIHLRSTLCSRRMTEEFRLSTEAFEWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSMGSGMTPGGAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccactgcgcctcatcaagagagttcag
ttcggcatcatcagtccagatgagcttaaacggatgtctgtcacagaagggggcatcaag
taccctgagaccacagaaggtgggcgcccaaaattgggtggtctcatggacccccgacag
ggtgtaatagaacgatcaggccggtgccagacatgtgcaggtaacatgacggagtgcccc
ggccactttggtcacattgagttggcaaagccagtctttcatgttggcttcataacaaag
atcatgaaagtcctccgctgcgtctgtttcttttgttccaaattactggttgatgcgaat
aatccaaagatcaaagacatcctgtcaaagtcgaaaggccagccacgaaaacgtctgacc
catgtatatgacctgtgtaaaggcaaaaacatctgtgagggtggggaagagatggacaac
aagtttggagttgagcaacaggagaatgatgaggacatcactaaggagaagggacacggt
ggctgtggacggtaccagccacgtatccggcgctcaggtctggaattatacgctgagtgg
aagcatgtgaacgaggactctcaggagaaaaagattctcctcagccctgagcgtgtccat
gagattttcaaacgcatctcagatgaggaggacatcatcctgggcatggaccccaaatat
gcacggcctgagtggatgatcgtcaccgtgttgcctgtgccccccctcgctgtccgacct
gctgttgtcatgcaggggtctgctagaaaccaggatgatctgacccacaagctagctgac
attgtaaaaattaataaccagcttcgacggaacgaacaaagtggagctgccgcacacgtt
atagcagaagacgtcaagcttctgcagttccatgtggccacaatggtggacaatgagctg
cctggcttacctcgagcaatgcaaaaatcaggccgtccactcaaatccatcaagcaaaga
ctgaagggtaaagaggggcgagtgcgaggtaacctgatgggaaagcgtgtggacttctct
gcccgaaccgtcattacgcctgaccccaacttacagatcgatcaggtgggcgtccctcgt
tccatcgctgccaacatgaccttcccagagattgtcacaccatttaacatcgacaggctc
caggagcttgtgagaagaggtaacagtcagtatccaggagccaaatacatcatccgtgat
aatggagacaggattgaccttcggttccaccccaaaccgagtgatcttcaccttcagatt
ggatataaggtggaacgacatatgtgtgatggagacatcgttatcttcaacagacagcct
acattgcacaaaatgtctatgatgggccacagggttcgaatcctgccctggtctacattc
cgacttaatctcagtgtaacaaccccgtacaatgctgactttgatggggatgagatgaac
ctgcacttgccccagtcactggagactcgtgctgagattcaggaactggcaatggtgcct
cgtatgatcgtcacaccccagtccaacagacctgtcatgggtatcgtgcaggacacactc
actgcagtgcgcaagttcacaaagagagatgtcttcttagagaggggggaagtgatgaat
cttctgatgttcctctccacctgggatggtaaagtgccacagccagccatcctgaagcca
agacctctctggactggcaaacagatcttcagcttgatcatcccaggccatatcaatgtc
attcgtacgcacagtacccatccggatgacgaggacagcggcccctataagcacatctct
cctggagacacaaaggtgattgtggagaatggtgagttgatcatggggattctttgtaag
aagtcccttggtacctctgctggttcccttgtgcacatctcatatctggagatgggtcat
gacatcactcgcctcttctactcaaacatccaaactgtggtcaacaactggttgctcatc
gagggtcactccattggtattggtgactcaattgctgatgctaagacatatcttgacatt
cagaacactattaagaaggccaagcaagatgtgatagaggtcattgagaaagcccacaac
aatgaactggaacccactccaggtaacacactaaggcagacctttgagaaccaggtcaac
cgtattctgaacgatgctcgagacaagaccggatcctctgcgcaaaaatcgctgtctgag
tacaacaacttcaagtccatggtggtggctggatccaaaggatctaaaattaacatctca
caggttattgctgtagtggggcagcagaacgttgagggtaagcgtatccctttcggcttc
aagcatcgcactctgcctcacttcatcaaagatgactatggtccagagagtagagggttt
gtggagaactcctacctggctggacttacacctacagagtttttcttccacgccatggga
ggaagagagggtctgatcgacacagctgtgaaaactgctgagacaggttatattcagcgt
cgtctgatcaagtctatggagtctatcatggtgaagtatgatgccacagtgaggaactcc
attaaccaggtggtgcagctgagatatggagaggacggtctggcaggggaggctgtagag
ttccagaacatggccactcttaagccctctaacaaagctttcgagaaaaagttcaagttt
gactataccaatgagcgagctctccggcgcaccctacaggaagatgtgttgaaggatgtg
atgaccaatgcacatgtgcagagctctctggagagagagtttgaaaagatgagggaagac
cgagagattcttagggccatttttcctactggagacagcaaggtggtgctgccgtgcaat
cttgccagaatgatctggaatgcacagaagattttccgcatcaacacacgaactccaact
gatctgaaccctttaagagtggtggagggtgtgcaagagctgagtaagaagctgataatt
gtaaacggtgacgacccactaagcaagcaggcccagcagaatgctacattgctctttaac
atccatctgcgctccaccctctgctccaggcgaatgactgaggagttccgccttagcacg
gaagcctttgagtggctgctaggggagattgagacaaagttcaaccagtctattgctcac
ccaggtgagatggtaggtgctctggctgctcagtctctgggagagcctgccacccagatg
accctgaacaccttccattatgccggtgtgtcggccaagaacgtcaccttgggtgtgcct
cgtctcaaagagctgatcaacatctccaaaaggcccaaaactccttccctcacagtgttc
ctgttgggccaggcggctcgtgatgccgagcgagccaaagacatcctgtgtcgcctggag
cacactacactgcgcaaggtcactgccaacactgccatctactacgaccccaacccacag
agcacggtggtggctgaggatcaagagtgggtgaacgtttactatgaaatgcccgacttt
gacgtgacccgcatctcgccctggctgctgcgtatcgagctggatcgcaaacacatgact
gaccgcaagctgaccatggagcagatcgcagaaaagatcaatgcaggatttggtgatgat
ctgaactgtattttcaatgacgataacgctgagaaactggtgctgcgaatcagaataatg
aacagcgatgagaacaaattccaggaggatgaggaggtggtggataagatggacgatgat
gtgtttttgcggtgcattgaatccaacatgctgaccgacatgacccttcaaggcattgaa
cagatcagcaaggtgtacatgcatcttcctcagacagacaacaagaaaaagatcataatc
acagaggatggtgagtttaaggccctgcaagaatggattttggagacggacggtgtcagt
cttatgagagttctaagtgagaaagacgtggaccctgtcaggaccacctccaacgacatt
gtggagatctttactgtgctcggtattgaggcagtacgcaaggctctagagagagaattg
taccatgtcatctcctttgatggttcatatgtcaactaccgtcaccttgccctgctctgt
gacaccatgacttgccgaggtcacctgatggccatcacccgtcacggcatcaacagacaa
gacactggaccactcatgaagtgttcttttgaagagacggtggatgtattgatggaagca
tcctcccatggagagtgtgatcctatgaagggagtgtctgaaaacatcatgctgggacag
ttggctcctgctggcactggctgctttgacctgctgctggatgctgagaaatgcaaatat
ggcatggagattcccaccaacatccctggtatcagtgttgctggaccaacgggaatgttc
tttggctctgctcccagtcccatgagtggcatgtctcctgccatgaccccctggaacaca
ggtgctaccccagcttacggtgcctggtcacccagcatgggaagtggaatgactcccggg
ggtgcaggcttctcacccagcgctgcatccgatgcaagtggcttctctccaggctactcc
cctgcatggtctcctactcctggctctcctggctctcctggaccagccagcccttacatt
ccctctccaggtggtgccatgtctccaaactattcccccacctctccagcctatgagcca
cgctcccctggaggatacacaccacagagccctggctactccccaacgtctccatcttac
tctccaacttctccttcatattctccaaccagccccaactacagccctacatctccgtct
tattctccaacctcaccctcctactccccaacgtcaccgtcttattctcctacctctcca
agctattcaccgacttcaccctcctattctccaacatctccatcttattctccaacctca
ccatcatattcacccacttcgcctagttacagcccaacctcgcccagctacagcccaacc
tcacccagctatagccctacatcaccatcctattctccaacatcgccatcttattccccg
acgtcaccttcttattccccgacgtcaccctcttactcaccaacatcaccctcttactca
ccaacatcgccaagttacagcccgacttcaccaaactacacccctacttcccccagttac
tcaccaacatctccatcttacagtccaacttccccttcctactcacccacttctccaaat
tacacccccaccagcccaaactactctccaacatctccttcttactctcctacttctcca
tcctactctccatccagtccacgttacacccctcagtcccccacttacaccccaagctcg
ccctcttacagtccaagctccccgtcgtactccccaacgtctccaaaatacacccccacc
tctccatcctacagccccagttctccagagtacacacccacttctcccaaatactcaccc
acttcaccaaagtattcacccacttcacccaagtacagcccaacctctcccacatactcg
cctaccacgcccaagtacagcccaacttctcctacctattctcctacatctcccacctac
accccaaccagccccaaatattcccccacttccccaacctactccccaacttcacccaaa
tactcccccacatcccctacgtactcgcccactagccctaaaggctccacgtacagcccc
acatctcctggctacagccccacctctccaacctacagtccagctatcagccctgatgac
agtgatgaggaaaacaactga
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integrated database retrieval system
